View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_2D_low_1 (Length: 1106)

Name: NF9960_2D_low_1
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_2D_low_1
NF9960_2D_low_1
[»] chr5 (16 HSPs)
chr5 (194-1079)||(18244620-18245505)
chr5 (21-146)||(18245654-18245779)
chr5 (975-1106)||(10591936-10592066)
chr5 (975-1105)||(22188000-22188127)
chr5 (975-1076)||(5123500-5123600)
chr5 (964-1079)||(31113370-31113484)
chr5 (978-1103)||(2804487-2804611)
chr5 (975-1106)||(30784988-30785118)
chr5 (978-1103)||(2798320-2798444)
chr5 (985-1101)||(18909313-18909428)
chr5 (977-1047)||(36212964-36213033)
chr5 (1037-1106)||(3741136-3741205)
chr5 (975-1047)||(32313108-32313179)
chr5 (976-1047)||(29553607-29553677)
chr5 (1037-1082)||(2651540-2651585)
chr5 (975-1008)||(2760312-2760345)
[»] chr4 (23 HSPs)
chr4 (197-412)||(31790982-31791197)
chr4 (975-1106)||(38766098-38766228)
chr4 (975-1106)||(31307068-31307198)
chr4 (975-1105)||(14854615-14854744)
chr4 (975-1104)||(35972354-35972482)
chr4 (975-1106)||(35334100-35334230)
chr4 (964-1106)||(45994531-45994672)
chr4 (975-1106)||(46016155-46016288)
chr4 (975-1050)||(33529322-33529396)
chr4 (975-1106)||(13686610-13686741)
chr4 (983-1106)||(38844178-38844300)
chr4 (975-1065)||(9012320-9012409)
chr4 (984-1106)||(17135106-17135226)
chr4 (977-1106)||(22189392-22189520)
chr4 (1032-1103)||(11140469-11140540)
chr4 (1029-1103)||(7096108-7096182)
chr4 (983-1106)||(3649056-3649178)
chr4 (980-1047)||(47023470-47023536)
chr4 (975-1080)||(13948594-13948698)
chr4 (976-1079)||(8059029-8059131)
chr4 (984-1106)||(51853707-51853826)
chr4 (965-1103)||(56447115-56447251)
chr4 (1026-1095)||(29597493-29597562)
[»] chr8 (16 HSPs)
chr8 (975-1106)||(36994502-36994632)
chr8 (978-1106)||(12958090-12958217)
chr8 (975-1106)||(19715727-19715858)
chr8 (975-1106)||(2743942-2744072)
chr8 (975-1106)||(13468747-13468877)
chr8 (983-1106)||(30056011-30056133)
chr8 (975-1106)||(4125026-4125156)
chr8 (981-1106)||(15682938-15683062)
chr8 (975-1064)||(7839255-7839343)
chr8 (975-1106)||(30936013-30936143)
chr8 (1037-1106)||(35207009-35207078)
chr8 (1026-1105)||(11363279-11363357)
chr8 (975-1026)||(24988587-24988638)
chr8 (1029-1103)||(4321559-4321633)
chr8 (1036-1105)||(27226650-27226719)
chr8 (985-1106)||(44638992-44639112)
[»] chr7 (24 HSPs)
chr7 (975-1106)||(29059814-29059944)
chr7 (975-1106)||(31492112-31492242)
chr7 (975-1106)||(8839283-8839413)
chr7 (975-1106)||(19477252-19477381)
chr7 (950-1095)||(23933628-23933772)
chr7 (989-1106)||(13254117-13254233)
chr7 (985-1106)||(7265325-7265445)
chr7 (1029-1106)||(27484104-27484181)
chr7 (964-1106)||(28537399-28537536)
chr7 (985-1106)||(46373682-46373802)
chr7 (1026-1106)||(5905831-5905911)
chr7 (1003-1106)||(40099302-40099404)
chr7 (975-1026)||(11486746-11486797)
chr7 (1026-1096)||(30614734-30614804)
chr7 (975-1103)||(20207510-20207636)
chr7 (975-1027)||(29428794-29428846)
chr7 (975-1106)||(4059695-4059824)
chr7 (1030-1105)||(7190415-7190490)
chr7 (975-1106)||(35707856-35707985)
chr7 (975-1021)||(31776511-31776557)
chr7 (964-1006)||(36821071-36821113)
chr7 (975-1025)||(37339735-37339785)
chr7 (975-1025)||(42741811-42741860)
chr7 (1026-1103)||(40211965-40212042)
[»] chr1 (25 HSPs)
chr1 (975-1106)||(22022129-22022259)
chr1 (975-1105)||(16756092-16756221)
chr1 (975-1074)||(36806652-36806750)
chr1 (949-1101)||(46864105-46864256)
chr1 (987-1088)||(9781003-9781103)
chr1 (1026-1103)||(32883622-32883699)
chr1 (1029-1106)||(45806245-45806322)
chr1 (975-1106)||(12035558-12035689)
chr1 (1026-1106)||(36982364-36982444)
chr1 (1026-1106)||(40019250-40019330)
chr1 (1037-1106)||(17600561-17600630)
chr1 (1049-1106)||(21774612-21774669)
chr1 (951-1044)||(44913180-44913272)
chr1 (975-1079)||(7242809-7242912)
chr1 (975-1055)||(42297444-42297523)
chr1 (975-1044)||(15642526-15642594)
chr1 (975-1104)||(18428144-18428271)
chr1 (1049-1106)||(52957423-52957480)
chr1 (1037-1106)||(29124754-29124823)
chr1 (1026-1103)||(31733743-31733820)
chr1 (987-1047)||(32883561-32883620)
chr1 (975-1106)||(28724682-28724811)
chr1 (977-1023)||(2044488-2044534)
chr1 (996-1074)||(36522259-36522336)
chr1 (980-1073)||(15675854-15675946)
[»] chr3 (21 HSPs)
chr3 (207-397)||(40751988-40752178)
chr3 (975-1106)||(48204313-48204443)
chr3 (950-1106)||(30995942-30996097)
chr3 (975-1106)||(25224708-25224838)
chr3 (964-1099)||(27763737-27763871)
chr3 (976-1064)||(20861299-20861386)
chr3 (975-1106)||(38331137-38331267)
chr3 (976-1105)||(22288245-22288373)
chr3 (977-1106)||(14352563-14352694)
chr3 (964-1106)||(40294621-40294762)
chr3 (975-1092)||(39950235-39950351)
chr3 (985-1106)||(15283084-15283200)
chr3 (975-1106)||(48210962-48211092)
chr3 (975-1074)||(55123138-55123236)
chr3 (975-1025)||(8757433-8757483)
chr3 (996-1058)||(25739144-25739205)
chr3 (1037-1106)||(54877842-54877911)
chr3 (1026-1106)||(50518606-50518686)
chr3 (950-1065)||(1642656-1642770)
chr3 (1037-1106)||(22755653-22755722)
chr3 (1009-1106)||(38088644-38088740)
[»] scaffold0182 (1 HSPs)
scaffold0182 (975-1106)||(26340-26470)
[»] chr2 (24 HSPs)
chr2 (975-1106)||(42745118-42745248)
chr2 (975-1106)||(5394406-5394535)
chr2 (984-1106)||(44752205-44752326)
chr2 (975-1106)||(17981507-17981636)
chr2 (975-1106)||(18105365-18105494)
chr2 (975-1106)||(31579231-31579361)
chr2 (975-1101)||(14121884-14122009)
chr2 (1029-1106)||(12133285-12133362)
chr2 (999-1106)||(993763-993868)
chr2 (1029-1106)||(44732628-44732705)
chr2 (987-1105)||(9438150-9438267)
chr2 (975-1025)||(25423833-25423883)
chr2 (985-1086)||(37180013-37180108)
chr2 (1026-1106)||(13153975-13154055)
chr2 (1032-1103)||(37568785-37568856)
chr2 (1013-1084)||(39314477-39314547)
chr2 (1014-1106)||(34483471-34483561)
chr2 (975-1026)||(17655749-17655800)
chr2 (975-1078)||(38743775-38743877)
chr2 (976-1026)||(37092198-37092248)
chr2 (1029-1106)||(7157507-7157584)
chr2 (984-1045)||(12233086-12233146)
chr2 (964-1025)||(14551563-14551624)
chr2 (1049-1106)||(28365958-28366015)
[»] chr6 (17 HSPs)
chr6 (977-1106)||(25084043-25084171)
chr6 (975-1106)||(12411157-12411287)
chr6 (976-1106)||(21028982-21029115)
chr6 (975-1106)||(21910214-21910343)
chr6 (975-1106)||(28099252-28099382)
chr6 (986-1106)||(278401-278519)
chr6 (975-1106)||(28933147-28933277)
chr6 (987-1105)||(423665-423782)
chr6 (975-1081)||(12836899-12837004)
chr6 (964-1106)||(31107484-31107625)
chr6 (975-1074)||(31412163-31412261)
chr6 (1040-1106)||(15614639-15614705)
chr6 (994-1106)||(5944851-5944962)
chr6 (976-1058)||(21028845-21028924)
chr6 (970-1078)||(24449969-24450076)
chr6 (982-1069)||(29986794-29986880)
chr6 (988-1105)||(7468556-7468671)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1040-1106)||(32330-32396)


Alignment Details
Target: chr5 (Bit Score: 758; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 194 - 1079
Target Start/End: Complemental strand, 18245505 - 18244620
Alignment:
Q  194 atgtgaaggcaagagttgtaggctgagatggttcaaccaactggatccaagaatcaacagaagagcatttacagaagaagaggaagaaagactaatgcaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18245505 atgtgaaggcaagagttgtaggctgagatggttcaaccaactggatccaagaatcaacagaagagcatttacagaagaagaggaagagagactaatgcaa 18245406  T
Q  294 gcacatagaatttatggaaacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaa 393  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245405 gcacatagaatttatggaaacaaatgggcaatgatagctagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaa 18245306  T
Q  394 gaaagtacagagaacaatctaatgcatacaggagaagaagattgagccaaaatgtttatagcagaatggagcaaaatccaagcttcggccgcagggaaac 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  18245305 gaaagtacagagaacaatctaatgcatacaggagaagaagattgagccaaaatgtttacagcagaatggagcaaaatccaagcttcggccgcagggacac 18245206  T
Q  494 cgcaacaatggaaacagaatcatcaccaccttattttctcaatggagccccacttgggaatagtatgtccattttcccatatgctacttctttccaacat 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18245205 cgcaacaatggaaacagaatcatcaccaccttattttctcaatggagccccacttgggaatagtatgtccattttccaatatgctacttctttccaacat 18245106  T
Q  594 tgtgctcatggtggtagggttgagtatggtttagatgttttacctcacatgagtggtgagagagaagctatgcaaggacccctacatgttggtttgtatg 693  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245105 tgtgctcatggtggtagggttgagtatggtttaaatgttttacctcacatgagtggtgagagagaagctatgcaaggacccctacatgttggtttgtatg 18245006  T
Q  694 ctcaacaagcaccttttgattacttctctggtgtgtgttgtttctctctaaatccttctcttttgtttacttcatattcttgtaggagacaccatggttt 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18245005 ctcaacaagcaccttttgattacttctctggtgtgtgttgtttctctctaaatccttctcttttgtttacttcatattcttgtaggagacaacatggttt 18244906  T
Q  794 tcataaattgattttgtggtcacggttgttgttatgctgcgtattctttataagtgcattacaatatttatgttcgcaatataacttcaaccgcgattgc 893  Q
    |||||||||||||||||||||  |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18244905 tcataaattgattttgtggtcgtggttgttgttaacatgcgtattctttataagtgcattacaatatttatgttcgcaatataacttcaaccgcgattgc 18244806  T
Q  894 aatttagaacagtgaaatttatcgagtagactagagacgaaaacctag-nnnnnnngggtgtaaattagacatcctttgcgagcaactgcagagactaat 992  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         | ||||||| ||||||||| ||| ||||||||| |||||||||    
T  18244805 aatttagaacagtgaaatttatcgagtagactagagacgaaaacctagtttttttttgttgtaaatcagacatcctctgctagcaactgcggagactaat 18244706  T
Q  993 ccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacc 1079  Q
    | ||| |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18244705 ctctcaagtattgtggaacccaaatgggtgg-aaaaatctcccaaagagttttaatgctgctgcatgttcaagactgaattcaaacc 18244620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 18245779 - 18245654
Alignment:
Q  21 atttagtatgtgttcacatagtcttaaatttcggttgcaaaaattgttatattgcaaccataattaaaatttaaaactatgtgtatatgaacttatgaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245779 atttagtatgtgttcacatagtcttaaatttcggttgcaaaaattgttatattgcaaccataattaaaatttaaaactatgtgtatatgaacttatgaag 18245680  T
Q  121 agatgtatatatttggagtttagaac 146  Q
    ||||||||||||||||||||||||||    
T  18245679 agatgtatatatttggagtttagaac 18245654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 10592066 - 10591936
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||| | ||||||| |||||||||||  |||||||||| ||||| ||| ||||    
T  10592066 gcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcaga-ctctccctaagagttttaacactgctgcatgcccaaggctggattc 10591968  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| |||||||||||| |||||||||||    
T  10591967 gaacccaggaccttggttaatctagaagagac 10591936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 975 - 1105
Target Start/End: Original strand, 22188000 - 22188127
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||||||| |||||||||| |||||||| ||||||| | ||||||  ||||||||||| |||| || ||| ||||| ||| ||||    
T  22188000 gcaactgcggagactaatccctctagtattgtgggacccaaataggcggcaga-ctctcc--aagagttttaacgctgttgtatgcccaaggctggattc 22188096  T
Q  1075 aaacccaagaccttggttaagctagaagaga 1105  Q
    |||||||| |||||||||||| |||||||||    
T  22188097 aaacccaataccttggttaagttagaagaga 22188127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 975 - 1076
Target Start/End: Original strand, 5123500 - 5123600
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||| |  ||||||| |||||||||||  |||||||||| ||||| ||||||||    
T  5123500 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggc-aggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 5123598  T
Q  1075 aa 1076  Q
    ||    
T  5123599 aa 5123600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 964 - 1079
Target Start/End: Complemental strand, 31113484 - 31113370
Alignment:
Q  964 atcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtcca 1063  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||| | ||||||||||||  |  ||||||| |||||||||||  |||||||||| |||    
T  31113484 atccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcgg-taggctctccctaagagttttaacactgctgcatgccca 31113386  T
Q  1064 agactgaattcaaacc 1079  Q
    || |||||||| ||||    
T  31113385 aggctgaattcgaacc 31113370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 978 - 1103
Target Start/End: Original strand, 2804487 - 2804611
Alignment:
Q  978 actgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaa 1077  Q
    |||||||||| ||||| || ||| ||||| ||| |||||||||||| ||  ||||||| || |||||||| |||||||||||  ||||  || |||| ||    
T  2804487 actgcagagattaatctctagagcattgtagaaaccaaatgggcggtaag-ctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaa 2804585  T
Q  1078 cccaagaccttggttaagctagaaga 1103  Q
    ||||| ||||||||||||||||||||    
T  2804586 cccaaaaccttggttaagctagaaga 2804611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 30784988 - 30785118
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||| ||  ||||||  ||| ||||||  |||| |  |||||| ||||||||||| | ||||||||||||||  ||| ||||    
T  30784988 gcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagat-tctccctaagagttttaacgttgctgcatgtccaaagctggattc 30785086  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||||||| ||| ||||||||||||||||    
T  30785087 gaacccaagacattgattaagctagaagagac 30785118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 978 - 1103
Target Start/End: Original strand, 2798320 - 2798444
Alignment:
Q  978 actgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaa 1077  Q
    |||||||||| ||||| || ||| ||||| ||| |||||||||||| ||  ||||||| || |||||||| |||||||||||  ||||  || |||| ||    
T  2798320 actgcagagattaatctctagagcattgtagaaaccaaatgggcggtaag-ctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaa 2798418  T
Q  1078 cccaagaccttggttaagctagaaga 1103  Q
    ||||  ||||||||||||||||||||    
T  2798419 cccagaaccttggttaagctagaaga 2798444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 985 - 1101
Target Start/End: Original strand, 18909313 - 18909428
Alignment:
Q  985 agactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaaga 1084  Q
    |||||||||||||||| ||||||| |  |||||| ||||||||  |||||| |||||||||||  |||||||||  ||||| ||| |||| |||| | ||    
T  18909313 agactaatccctcgagcattgtgggattcaaatgagcggcaaat-tctccctaagagttttaacactgctgcatacccaaggctggattcgaacctagga 18909411  T
Q  1085 ccttggttaagctagaa 1101  Q
    ||||| |||||||||||    
T  18909412 ccttgattaagctagaa 18909428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 977 - 1047
Target Start/End: Complemental strand, 36213033 - 36212964
Alignment:
Q  977 aactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaa 1047  Q
    |||||| ||||| ||||||||||| ||||||| ||| ||||||||||| |||||||||| |||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggc-aaactctccctaagagttttaa 36212964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1037 - 1106
Target Start/End: Complemental strand, 3741205 - 3741136
Alignment:
Q  1037 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||| | |||| ||| || |||||||||||||||| || |||| |||||||||||||||||||    
T  3741205 aagagttttaacgttgcttcatttctaagactgaattcaaactcacgaccatggttaagctagaagagac 3741136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 975 - 1047
Target Start/End: Original strand, 32313108 - 32313179
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaa 1047  Q
    ||||||| |||||||||||||||||||||||| | ||  |||||||| || |||||||||  |||||||||||    
T  32313108 gcaactgtagagactaatccctcgagtattgtaggacttaaatgggcagc-aaactctccttaagagttttaa 32313179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 976 - 1047
Target Start/End: Complemental strand, 29553677 - 29553607
Alignment:
Q  976 caactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaa 1047  Q
    |||||||||||||||||| || ||| ||| ||| |||||||||| || | |||||||||| |||||||||||    
T  29553677 caactgcagagactaatctcttgagcattctgggacccaaatggacgac-aaactctccctaagagttttaa 29553607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1037 - 1082
Target Start/End: Original strand, 2651540 - 2651585
Alignment:
Q  1037 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaa 1082  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||||    
T  2651540 aagagttttaacgctgctgcatctccaagattgaattcgaacccaa 2651585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 975 - 1008
Target Start/End: Complemental strand, 2760345 - 2760312
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtgg 1008  Q
    ||||||||||||||||||||||||||| ||||||    
T  2760345 gcaactgcagagactaatccctcgagtcttgtgg 2760312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 3e-63; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 197 - 412
Target Start/End: Complemental strand, 31791197 - 31790982
Alignment:
Q  197 tgaaggcaagagttgtaggctgagatggttcaaccaactggatccaagaatcaacagaagagcatttacagaagaagaggaagaaagactaatgcaagca 296  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||| || || |||||||| ||||  || ||||||||||||||| ||||||||||     
T  31791197 tgaaggtaagagttgtaggctaagatggttcaaccaattggatccaaggattaatagaagagcttttagtgatgaagaggaagaaagattaatgcaagct 31791098  T
Q  297 catagaatttatggaaacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaagaa 396  Q
    |||||||||||||| ||||||||||| ||||| || || || ||||| |||||||| || |||||||| || ||||||||||||||||||||||||||||    
T  31791097 catagaatttatggtaacaaatgggccatgattgctaggcttttccctggaagaactgataatgctgttaagaatcactggcatgttataatggcaagaa 31790998  T
Q  397 agtacagagaacaatc 412  Q
    ||||||||||||||||    
T  31790997 agtacagagaacaatc 31790982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 38766228 - 38766098
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||||||  |||||||||||||||| | ||||||| ||||||||||| ||||||||||| ||||| ||| ||||    
T  38766228 gcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcaga-ctctccctaagagttttaacgctgctgcatgcccaaggctggattc 38766130  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||| ||||||||||||||||||||||||    
T  38766129 aaacccaggaccttggttaagctagaagagac 38766098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 31307068 - 31307198
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| ||||    
T  31307068 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattc 31307166  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  31307167 gaacccaggaccttggttaagctagaagagac 31307198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 975 - 1105
Target Start/End: Complemental strand, 14854744 - 14854615
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||  ||||||| ||||||||||| | ||||||||| ||||| ||| ||||    
T  14854744 gcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaag-ctctccctaagagttttaacgatgctgcatgcccaaggctggattc 14854646  T
Q  1075 aaacccaagaccttggttaagctagaagaga 1105  Q
     ||||||  ||||||||||||||||||||||    
T  14854645 gaacccagaaccttggttaagctagaagaga 14854615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 975 - 1104
Target Start/End: Complemental strand, 35972482 - 35972354
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||  || |||| |||||||||||||||||| ||||||| || |||||||| ||||||| ||| ||| | ||| ||||    
T  35972482 gcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaa-ctctccctaatagttttaacgctgctgtatgcccatggctggattc 35972384  T
Q  1075 aaacccaagaccttggttaagctagaagag 1104  Q
     |||||||||||||||||||||||||||||    
T  35972383 gaacccaagaccttggttaagctagaagag 35972354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 35334100 - 35334230
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||   |||||| | |||||||||||  |||||||||| ||||| |||||| |    
T  35334100 gcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggc-ggactctctctaagagttttaactctgctgcatgcccaaggctgaatac 35334198  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||| |  |||||||||||||||||||||||    
T  35334199 gaaccaagaaccttggttaagctagaagagac 35334230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 964 - 1106
Target Start/End: Complemental strand, 45994672 - 45994531
Alignment:
Q  964 atcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtcca 1063  Q
    |||||| ||| |||||||| |||||||||| |||||| ||||||  ||||||||||||| ||   ||||||| ||||||||||| | || |||||| |||    
T  45994672 atccttggcgtgcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcagg-ctctccctaagagttttaacgttgttgcatgccca 45994574  T
Q  1064 agactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    || ||| |||| || ||| ||||||||||||||||||||||||    
T  45994573 aggctggattcgaatccaggaccttggttaagctagaagagac 45994531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 46016288 - 46016155
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||| | ||||||||| | ||||| ||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| ||||    
T  46016288 gcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattc 46016190  T
Q  1075 aaacccaagac---cttggttaagctagaagagac 1106  Q
     |||||| |||   |||||||||||||||||||||    
T  46016189 gaacccaggacctacttggttaagctagaagagac 46016155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 975 - 1050
Target Start/End: Complemental strand, 33529396 - 33529322
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgc 1050  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||||| || ||||||| ||||||||||||||    
T  33529396 gcaactgcggagactaatccctccagtattgtgggacccaaatgggcggc-aagctctccctaagagttttaatgc 33529322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 13686741 - 13686610
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctccca-aagagttttaatgctgctgcatgtccaagactgaatt 1073  Q
    |||||||  |||||||||| ||||||  |||||  |||||||||| ||||||| |||||||  ||||||||||| ||||||||| | |||||  || |||    
T  13686741 gcaactgtggagactaatctctcgagccttgtgagacccaaatggacggcaaa-ctctcccttaagagttttaacgctgctgcacgcccaaggatggatt 13686643  T
Q  1074 caaacccaagaccttggttaagctagaagagac 1106  Q
    | |||||| |||||||||||||| |||||||||    
T  13686642 cgaacccaggaccttggttaagcaagaagagac 13686610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 983 - 1106
Target Start/End: Original strand, 38844178 - 38844300
Alignment:
Q  983 agagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaa 1082  Q
    ||||||||||| |||||| |||||||    ||||||||||||| | |||| || ||||||||||| |||| |||||| ||||  ||| |||| ||| ||     
T  38844178 agagactaatctctcgagcattgtgggggtcaaatgggcggcaga-ctcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcat 38844276  T
Q  1083 gaccttggttaagctagaagagac 1106  Q
    ||||||||||||||||||||||||    
T  38844277 gaccttggttaagctagaagagac 38844300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 975 - 1065
Target Start/End: Complemental strand, 9012409 - 9012320
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaag 1065  Q
    |||||||| ||||||||||||||||| ||||||| |||||| |||||||| || ||||||| |||||||| ||  |||||||||| |||||    
T  9012409 gcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggc-aagctctccctaagagtttgaacactgctgcatgcccaag 9012320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 984 - 1106
Target Start/End: Complemental strand, 17135226 - 17135106
Alignment:
Q  984 gagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaag 1083  Q
    |||||||||||||||||| || ||| || |||||| |||||||| ||||||| ||||||||||| |||||||||||  |||| ||| |||| || | | |    
T  17135226 gagactaatccctcgagtcttctgggactcaaatgcgcggcaaa-ctctccctaagagttttaacgctgctgcatgcacaaggctggattcgaa-ctagg 17135129  T
Q  1084 accttggttaagctagaagagac 1106  Q
    || ||| ||||||||||||||||    
T  17135128 actttgattaagctagaagagac 17135106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 977 - 1106
Target Start/End: Original strand, 22189392 - 22189520
Alignment:
Q  977 aactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaa 1076  Q
    |||| ||||||||||| |||||||  |||||| ||||| || ||||||||  |||| || ||||||||||||| |||||||||  ||||  || |||| |    
T  22189392 aactacagagactaattcctcgagccttgtgggacccatataggcggcaat-ctctacctaagagttttaatgttgctgcatgcacaaggttggattcga 22189490  T
Q  1077 acccaagaccttggttaagctagaagagac 1106  Q
    || |  ||||||||||||||||||||||||    
T  22189491 actctggaccttggttaagctagaagagac 22189520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1032 - 1103
Target Start/End: Complemental strand, 11140540 - 11140469
Alignment:
Q  1032 tcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 1103  Q
    |||| ||||||||||| ||||||||||| ||||| ||| |||| || ||| |||||||||||||||||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaaga 11140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1029 - 1103
Target Start/End: Complemental strand, 7096182 - 7096108
Alignment:
Q  1029 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 1103  Q
    ||||||| |||||||||||   ||||||||   |||||||| |||||||||||| ||||||||||||||||||||    
T  7096182 ctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttggttaagctagaaga 7096108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 983 - 1106
Target Start/End: Original strand, 3649056 - 3649178
Alignment:
Q  983 agagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaa 1082  Q
    |||||||||||| |||||| |||||  | ||||||| |||| ||||||||||| ||||||||||| | || |||||| ||||||||  ||| ||| ||||    
T  3649056 agagactaatccttcgagtcttgtgcgatccaaatgagcgg-aaaactctccctaagagttttaacgttgttgcatgcccaagactagatttaaatccaa 3649154  T
Q  1083 gaccttggttaagctagaagagac 1106  Q
     |  |||||||| ||| |||||||    
T  3649155 aattttggttaaactaaaagagac 3649178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 980 - 1047
Target Start/End: Complemental strand, 47023536 - 47023470
Alignment:
Q  980 tgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaa 1047  Q
    ||||||||||||||| |||||| |||||| |||||||||| || | |||||||||| |||||||||||    
T  47023536 tgcagagactaatccttcgagtcttgtgggacccaaatggacgac-aaactctccctaagagttttaa 47023470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 975 - 1080
Target Start/End: Original strand, 13948594 - 13948698
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||||||||||||||||||||| ||||||  |  ||||||| |||  | |||||||| |||||||||||  |||||||||  ||||| ||| ||||    
T  13948594 gcaactgcagagactaatccctcgagcattgtgagattcaaatggacgg-tagactctccctaagagttttaacactgctgcatacccaaggctggattc 13948692  T
Q  1075 aaaccc 1080  Q
     |||||    
T  13948693 gaaccc 13948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 976 - 1079
Target Start/End: Original strand, 8059029 - 8059131
Alignment:
Q  976 caactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattca 1075  Q
    |||||| ||||||||||| ||| ||| |||||| ||||||||||| ||   ||||||| | ||||||||||| | || || |||||||||||| |||| |    
T  8059029 caactgtagagactaatcactccagtcttgtgggacccaaatgggtgg-tcaactctctctaagagttttaacgttgttgtatgtccaagactaaattta 8059127  T
Q  1076 aacc 1079  Q
    ||||    
T  8059128 aacc 8059131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 984 - 1106
Target Start/End: Complemental strand, 51853826 - 51853707
Alignment:
Q  984 gagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaag 1083  Q
    ||||||||||||||||||||||||  ||| |||||| | || ||||| | || ||||||||||| |  |||||||| ||||| |||||||| || |||      
T  51853826 gagactaatccctcgagtattgtgagaccaaaatggaccgc-aaact-ttcctaagagttttaaggaagctgcatgcccaaggctgaattcgaa-ccaga 51853730  T
Q  1084 accttggttaagctagaagagac 1106  Q
    || ||||||||| ||||||||||    
T  51853729 actttggttaagttagaagagac 51853707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 965 - 1103
Target Start/End: Original strand, 56447115 - 56447251
Alignment:
Q  965 tcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaa 1064  Q
    |||| |||| |||| |||| ||| ||||||||| ||| ||||||| || |||||||  ||||| ||||||| |||||||||||  |||||||||| |||     
T  56447115 tcctctgcgcgcaattgcatagattaatccctcaagtcttgtggatcc-aaatgggtagcaaa-ctctccctaagagttttaacactgctgcatgcccat 56447212  T
Q  1065 gactgaattcaaacccaagaccttggttaagctagaaga 1103  Q
      ||| |||| |||| | ||| |||||||| ||||||||    
T  56447213 agctggattcgaacctaggactttggttaaactagaaga 56447251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1095
Target Start/End: Complemental strand, 29597562 - 29597493
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaag 1095  Q
    |||||||| | ||||||||||| | || |||||| |||||||||||||  ||| ||||||||| ||||||    
T  29597562 aaactctctctaagagttttaacgttgttgcatgcccaagactgaatttgaactcaagacctttgttaag 29597493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 36994502 - 36994632
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||| ||||| ||||||  ||||||||||| ||||||||||||||||| ||| ||||    
T  36994502 gcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaa-ctctccttaagagttttaacgctgctgcatgtccaaggctggattc 36994600  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| |||||||||||| |||||||||||    
T  36994601 gaacccaggaccttggttaaactagaagagac 36994632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 978 - 1106
Target Start/End: Original strand, 12958090 - 12958217
Alignment:
Q  978 actgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaa 1077  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||| ||   ||||||| ||||||||||| ||||||||||| ||||  ||| |||||||    
T  12958090 actgcggagactaatccctcgagcattgtgggacccaaatgggcgacagg-ctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaa 12958188  T
Q  1078 cccaagaccttggttaagctagaagagac 1106  Q
    |||| ||||||||||||||||||||||||    
T  12958189 cccatgaccttggttaagctagaagagac 12958217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 19715727 - 19715858
Alignment:
Q  975 gcaactgcagagactaatccc-tcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaatt 1073  Q
    |||||||| |||||||||||| ||||| ||||||| |||||||||||||||||  |||||||  |||||||||| ||||||||||| ||||| ||| |||    
T  19715727 gcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaag-ctctccctgagagttttaacgctgctgcatgcccaaggctggatt 19715825  T
Q  1074 caaacccaagaccttggttaagctagaagagac 1106  Q
    | |||||| ||||||||||||||||||| ||||    
T  19715826 cgaacccaggaccttggttaagctagaaaagac 19715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 2744072 - 2743942
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||| || ||   ||||||| |||||||||||  |||||||||| ||||| ||| ||||    
T  2744072 gcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatg-ctctccctaagagttttaacactgctgcatgcccaaggctggattc 2743974  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  2743973 gaacccaggaccttggttaagctagaagagac 2743942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 13468747 - 13468877
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||| ||||| ||||||| || ||||||||||||| | ||||| | ||||||||||| |||||| |||| ||||| ||| ||||    
T  13468747 gcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcaga-ctctctctaagagttttaacgctgctacatgcccaaggctggattc 13468845  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  13468846 gaacccaggaccttggttaagctagaagagac 13468877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 983 - 1106
Target Start/End: Original strand, 30056011 - 30056133
Alignment:
Q  983 agagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaa 1082  Q
    |||||||||||||||||| |||||||||||||||||| |||||   ||||||| ||||||||||||||||||||||| | ||| ||| |||  ||||||     
T  30056011 agagactaatccctcgagcattgtggaacccaaatggacggcagg-ctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccat 30056109  T
Q  1083 gaccttggttaagctagaagagac 1106  Q
    |||||| |||||||||||||||||    
T  30056110 gaccttcgttaagctagaagagac 30056133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 4125026 - 4125156
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||| |  ||||||| |||||||||||   ||||||||| ||||| ||  ||||    
T  4125026 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggc-aggctctccctaagagttttaacagtgctgcatgcccaaggcttgattc 4125124  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||| ||||||||||||||||||||    
T  4125125 gaacccaggacattggttaagctagaagagac 4125156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 981 - 1106
Target Start/End: Complemental strand, 15683062 - 15682938
Alignment:
Q  981 gcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaaccc 1080  Q
    ||||||| |||||||||||| ||||||| ||| ||||||||||||   ||||||| ||||||||||| ||||||||||| ||||| ||| |||| ||| |    
T  15683062 gcagagattaatccctcgagcattgtgggacctaaatgggcggcagg-ctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactc 15682964  T
Q  1081 aagaccttggttaagctagaagagac 1106  Q
    | ||||||| ||||||||||||||||    
T  15682963 aggaccttgattaagctagaagagac 15682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 975 - 1064
Target Start/End: Original strand, 7839255 - 7839343
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaa 1064  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||| |  ||||||| ||||||||||| ||||||||||| ||||    
T  7839255 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggc-atgctctccctaagagttttaaagctgctgcatgcccaa 7839343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 30936143 - 30936013
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||  ||||| | ||||||||||||||| |  ||||||| ||||||||||| | |||||||||   ||| ||| ||||    
T  30936143 gcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggc-aggctctccctaagagttttaacgttgctgcatgcttaaggctggattc 30936045  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     ||| || ||||||||||||| ||||||||||    
T  30936044 gaactcaggaccttggttaagttagaagagac 30936013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1037 - 1106
Target Start/End: Complemental strand, 35207078 - 35207009
Alignment:
Q  1037 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||| |||||||||||||||||  | ||||| ||||||  | |||||||||| ||||||||||    
T  35207078 aagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagac 35207009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1026 - 1105
Target Start/End: Complemental strand, 11363357 - 11363279
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagaga 1105  Q
    |||||||||| | ||||||||| | || ||||||| |||| |||||||||||| ||| | |||||||||| |||||||||    
T  11363357 aaactctccctaggagttttaacgatgttgcatgttcaaggctgaattcaaactcaata-cttggttaagttagaagaga 11363279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 975 - 1026
Target Start/End: Complemental strand, 24988638 - 24988587
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaa 1026  Q
    |||| ||| ||||||||||||||||||||||||| || |||||| |||||||    
T  24988638 gcaattgcggagactaatccctcgagtattgtgggactcaaatgagcggcaa 24988587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1029 - 1103
Target Start/End: Original strand, 4321559 - 4321633
Alignment:
Q  1029 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 1103  Q
    ||||||| ||||||||||| | |  |||||||| ||||||| |||||||||||  |||||  |||||||||||||    
T  4321559 ctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaaga 4321633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1036 - 1105
Target Start/End: Complemental strand, 27226719 - 27226650
Alignment:
Q  1036 aaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagaga 1105  Q
    |||||||||||| |||| | ||||  ||| |||||||||||||||| ||| ||| ||||| |||||||||    
T  27226719 aaagagttttaacgctgttacatgctcaatactgaattcaaacccacgacattgattaagttagaagaga 27226650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 985 - 1106
Target Start/End: Complemental strand, 44639112 - 44638992
Alignment:
Q  985 agactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaaga 1084  Q
    ||||||||| | | ||||||||||  | |||||| |||||||| ||||||| ||||||||||| | || ||||||  ||||  || |||||||  || ||    
T  44639112 agactaatctcccaagtattgtggggctcaaatgtgcggcaaa-ctctccctaagagttttaacgttgttgcatgctcaaggttggattcaaattcagga 44639014  T
Q  1085 ccttggttaagctagaagagac 1106  Q
    ||||| ||||| ||||||||||    
T  44639013 ccttgattaagttagaagagac 44638992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 8e-30; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 29059944 - 29059814
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||||||| || ||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| ||||    
T  29059944 gcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattc 29059846  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  29059845 gaacccaggaccttggttaagctagaagagac 29059814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 31492242 - 31492112
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||||||| ||| ||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| ||||    
T  31492242 gcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattc 31492144  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  31492143 gaacccaggaccttggttaagctagaagagac 31492112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 8839283 - 8839413
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||| ||| ||||||||||||||||||||||||| | | |||| ||||||| |  |||||| ||||||||||| ||||||||||| ||||| ||| ||||    
T  8839283 gcaattgcggagactaatccctcgagtattgtgggatctaaataggcggcagat-tctccctaagagttttaacgctgctgcatgcccaaggctggattc 8839381  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  8839382 gaacccaggaccttggttaagctagaagagac 8839413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 19477252 - 19477381
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||||||| || ||||||| |||||||||| ||||||  ||||||| |||||||||||  ||| |||||| ||||| ||| ||||    
T  19477252 gcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaag-ctctccctaagagttttaacactgttgcatgcccaaggctggattc 19477349  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
    |||||||  |||||||||||||||||||||||    
T  19477350 aaacccagaaccttggttaagctagaagagac 19477381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 950 - 1095
Target Start/End: Original strand, 23933628 - 23933772
Alignment:
Q  950 ggtgtaaattagacatcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatg 1049  Q
    |||||||||| |  ||||| || | |||| |||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||| || ||||||||||    
T  23933628 ggtgtaaattgggtatcctctgtgtgcaattgcagagactaatccctcaagtattgtcgaacctaaatgggcggc-aaactctccctaaaagttttaatg 23933726  T
Q  1050 ctgctgcatgtccaagactgaattcaaacccaagaccttggttaag 1095  Q
    ||  |||| |  |||||||| |||| |||||| |||||| ||||||    
T  23933727 ctcttgcaagctcaagactggattcgaacccaggaccttagttaag 23933772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 989 - 1106
Target Start/End: Original strand, 13254117 - 13254233
Alignment:
Q  989 taatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagacctt 1088  Q
    |||||||||||| ||||||| ||| ||||||||||||   ||||||| |||||||| || ||||||||||| | ||| ||| |||| ||| || ||||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcagg-ctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggacctt 13254215  T
Q  1089 ggttaagctagaagagac 1106  Q
    ||||||||||||||||||    
T  13254216 ggttaagctagaagagac 13254233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 985 - 1106
Target Start/End: Original strand, 7265325 - 7265445
Alignment:
Q  985 agactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaaga 1084  Q
    |||||||||  ||||||||||||| ||||||||| || ||||| ||||||| |||||||||||    |||||||| ||||||||  || | ||||||| |    
T  7265325 agactaatcattcgagtattgtgggacccaaatgagcagcaaa-ctctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaa 7265423  T
Q  1085 ccttggttaagctagaagagac 1106  Q
    | ||||||||||||||||||||    
T  7265424 ctttggttaagctagaagagac 7265445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1029 - 1106
Target Start/End: Original strand, 27484104 - 27484181
Alignment:
Q  1029 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||| ||||||||||| ||||||||||| ||| | ||| ||| |||| || ||||||||||||||||||||||||    
T  27484104 ctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaagagac 27484181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 964 - 1106
Target Start/End: Complemental strand, 28537536 - 28537399
Alignment:
Q  964 atcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtcca 1063  Q
    |||||| ||| |||||||| |||||||||||||| || || |    ||||||||||||||||   ||||||| ||||||||||| | || |||||| |||    
T  28537536 atccttcgcgtgcaactgcggagactaatccctcaagcatgg----acccaaatgggcggcagg-ctctccctaagagttttaacgttgttgcatgccca 28537442  T
Q  1064 agactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    || ||| |||| ||||||| |||||| ||||| ||||||||||    
T  28537441 aggctggattcgaacccaaaaccttgattaagttagaagagac 28537399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 985 - 1106
Target Start/End: Complemental strand, 46373802 - 46373682
Alignment:
Q  985 agactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaaga 1084  Q
    ||||||||| |||||| ||||||  |||||||| ||||||||  ||||||| | ||||||||| | || || ||| ||||||||| |||| |||||| ||    
T  46373802 agactaatctctcgagcattgtgtgacccaaataggcggcaag-ctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccagga 46373704  T
Q  1085 ccttggttaagctagaagagac 1106  Q
     |||| ||||||||||||||||    
T  46373703 tcttgcttaagctagaagagac 46373682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1026 - 1106
Target Start/End: Complemental strand, 5905911 - 5905831
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||| || ||||||||||||||||||||||| |||| | || |||||| || ||||| ||||||||| ||||||||||    
T  5905911 aaactcttcccaagagttttaatgctgctgcatgcccaatattggattcaagcctaagacgttggttaagttagaagagac 5905831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1003 - 1106
Target Start/End: Original strand, 40099302 - 40099404
Alignment:
Q  1003 ttgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaag 1102  Q
    |||||| || ||||||||||||||  ||||||| |||||||||||||||||||||| |||||  ||| |||| ||  || || ||| |||||||||||||    
T  40099302 ttgtgggactcaaatgggcggcaag-ctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaag 40099400  T
Q  1103 agac 1106  Q
    ||||    
T  40099401 agac 40099404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 975 - 1026
Target Start/End: Original strand, 11486746 - 11486797
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaa 1026  Q
    ||||||| ||||||||||| || ||| |||||||||||||||||||||||||    
T  11486746 gcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaa 11486797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1026 - 1096
Target Start/End: Original strand, 30614734 - 30614804
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagc 1096  Q
    |||||||| | ||||||||||| |||| |||||| |||| ||| |||||||||  ||||||||||||||||    
T  30614734 aaactctctctaagagttttaacgctgatgcatgcccaaaactaaattcaaacttaagaccttggttaagc 30614804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 975 - 1103
Target Start/End: Complemental strand, 20207636 - 20207510
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||||| | | ||||||| ||||| || ||||||  ||||||||||| | || | |||| | ||| |||||||     
T  20207636 gcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggc-aagctctccttaagagttttaacgttgttacatgcctaaggctgaatta 20207538  T
Q  1075 aaacccaagaccttggttaagctagaaga 1103  Q
     ||||||| | ||| ||||||||||||||    
T  20207537 gaacccaa-atcttagttaagctagaaga 20207510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 975 - 1027
Target Start/End: Original strand, 29428794 - 29428846
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaa 1027  Q
    |||||||||||||||||||||||||  ||||||| | |||||||| |||||||    
T  29428794 gcaactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaaa 29428846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 4059695 - 4059824
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||| || ||||||||||||||||| |||||  ||||||||   ||| ||||||||| | ||||||||||| | || ||||||  |||| ||| ||||    
T  4059695 gcaacttcatagactaatccctcgagtcttgtgtgacccaaataaacgg-aaaactctctctaagagttttaacgatgttgcatgctcaaggctgtattc 4059793  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     ||| | ||||||||||||| ||| |||||||    
T  4059794 gaactc-agaccttggttaaactaaaagagac 4059824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1030 - 1105
Target Start/End: Original strand, 7190415 - 7190490
Alignment:
Q  1030 tctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagaga 1105  Q
    |||||| || ||||||||  | |||||||| ||||  |||||||||||| ||  ||||||||||||||||||||||    
T  7190415 tctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagaga 7190490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 35707985 - 35707856
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||||||||||||||||||||| ||||| | | | ||||||| ||| ||  |||||| |||| |||||| | || |||||||||||   || ||||    
T  35707985 gcaactgcagagactaatccctcgagcattgtaggatctaaatgggaggc-aagttctccctaagaattttaacgttgttgcatgtccaaagttggattc 35707887  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     || |||  ||||||||||| |||||||||||    
T  35707886 gaa-ccagaaccttggttaaactagaagagac 35707856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 975 - 1021
Target Start/End: Complemental strand, 31776557 - 31776511
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggc 1021  Q
    ||||||||  ||| |||||||||||||||||||| ||||||||||||    
T  31776557 gcaactgcgaagattaatccctcgagtattgtgggacccaaatgggc 31776511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 964 - 1006
Target Start/End: Original strand, 36821071 - 36821113
Alignment:
Q  964 atcctttgcgagcaactgcagagactaatccctcgagtattgt 1006  Q
    ||||| |||| |||||||||||||||||||||||||| |||||    
T  36821071 atcctctgcgcgcaactgcagagactaatccctcgagcattgt 36821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 975 - 1025
Target Start/End: Original strand, 37339735 - 37339785
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggca 1025  Q
    |||||||| ||||||||||||||||| ||| ||| |||||||| |||||||    
T  37339735 gcaactgcggagactaatccctcgagcattatgggacccaaataggcggca 37339785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 975 - 1025
Target Start/End: Original strand, 42741811 - 42741860
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggca 1025  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||| ||||    
T  42741811 gcaactgcagagattaatccctcgagtattatgg-acccaaatgggtggca 42741860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1026 - 1103
Target Start/End: Complemental strand, 40212042 - 40211965
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 1103  Q
    ||||||| || ||||||||||| | || |||||| ||||||||| |||  |||||| ||||||| |||||||| ||||    
T  40212042 aaactcttcctaagagttttaacgttgttgcatgcccaagactggatttgaacccatgaccttgattaagctaaaaga 40211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 8e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 22022259 - 22022129
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||| |||||   |||||| ||||||||||||||||||||||| ||||| ||| ||||    
T  22022259 gcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagt-tctccctaagagttttaatgctgctgcatgcccaaggctggattc 22022161  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     ||||||  ||||| |||||||||||||||||    
T  22022160 gaacccacaaccttagttaagctagaagagac 22022129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 975 - 1105
Target Start/End: Complemental strand, 16756221 - 16756092
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||  || ||   ||||||| ||||||||||| ||| ||||||| ||||  ||||||||    
T  16756221 gcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatg-ctctccctaagagttttaacgcttctgcatgcccaatgctgaattc 16756123  T
Q  1075 aaacccaagaccttggttaagctagaagaga 1105  Q
    |||||||  ||||||||||||||||||||||    
T  16756122 aaacccagaaccttggttaagctagaagaga 16756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 975 - 1074
Target Start/End: Complemental strand, 36806750 - 36806652
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| | || ||||| ||||||||||| ||| ||| ||| ||||| ||||||||    
T  36806750 gcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggc-agacactccctaagagttttaacgctactgtatgcccaaggctgaattc 36806652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 949 - 1101
Target Start/End: Complemental strand, 46864256 - 46864105
Alignment:
Q  949 gggtgtaaattagacatcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaat 1048  Q
    |||||||||| ||  |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||| |||| ||  |||||| |||| ||||||     
T  46864256 gggtgtaaatcaggtatcctttgcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggc-aagttctccctaagaattttaac 46864158  T
Q  1049 gctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaa 1101  Q
    ||| ||||||| ||||  ||| |||  ||||||| || ||| |||||||||||    
T  46864157 gctactgcatgcccaaagctggatttgaacccaaaactttgattaagctagaa 46864105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 987 - 1088
Target Start/End: Original strand, 9781003 - 9781103
Alignment:
Q  987 actaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagacc 1086  Q
    |||||||||||||| ||||||| |||||||||||||||  | ||||||| ||||||||||| ||||||||||| ||||| ||| |||| ||| |||||||    
T  9781003 actaatccctcgagcattgtgggacccaaatgggcggccga-ctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaagacc 9781101  T
Q  1087 tt 1088  Q
    ||    
T  9781102 tt 9781103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1026 - 1103
Target Start/End: Original strand, 32883622 - 32883699
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 1103  Q
    |||||||||| ||||||||||| ||||||||||||||||  ||| |||| ||||||| | ||||||||||||||||||    
T  32883622 aaactctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1029 - 1106
Target Start/End: Complemental strand, 45806322 - 45806245
Alignment:
Q  1029 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||| ||| || ||||||||||||| ||||||||||    
T  45806322 ctctccctaagagttttaaaactgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaagagac 45806245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 12035689 - 12035558
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagag-ttttaatgctgctgcatgtccaagactgaatt 1073  Q
    |||| ||| ||||||||||||||||| ||||||| ||||||||||||||| | |||||||| ||||| ||||||   || |||||| | ||| ||| |||    
T  12035689 gcaattgctgagactaatccctcgagcattgtgggacccaaatgggcggc-agactctccctaagagtttttaacaatgttgcatgccaaaggctggatt 12035591  T
Q  1074 caaacccaagaccttggttaagctagaagagac 1106  Q
    | |||| ||||| |||||||| |||||||||||    
T  12035590 cgaaccaaagactttggttaaactagaagagac 12035558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1026 - 1106
Target Start/End: Complemental strand, 36982444 - 36982364
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    |||||||||| ||||||||||| | || |||||||| ||| |||||||| ||||| ||||||||||||| |||||||||||    
T  36982444 aaactctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagac 36982364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1026 - 1106
Target Start/End: Complemental strand, 40019330 - 40019250
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    |||||||||| ||||||||||| | |||||||| |||||| |||||||| ||||||| |||||| ||||| ||||||||||    
T  40019330 aaactctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagac 40019250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1037 - 1106
Target Start/End: Original strand, 17600561 - 17600630
Alignment:
Q  1037 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||| | || ||||||  |||| |||||||| |||||||||||||||||||||||||||||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagac 17600630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1049 - 1106
Target Start/End: Complemental strand, 21774669 - 21774612
Alignment:
Q  1049 gctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||    
T  21774669 gctgctgcatgtccaagactggattcgaacccaaaaccttgattaagctagaagagac 21774612  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 951 - 1044
Target Start/End: Complemental strand, 44913272 - 44913180
Alignment:
Q  951 gtgtaaattagacatcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttt 1044  Q
    |||||||||||  ||||| |||| | ||||||||||||||||| |||||| ||||||| ||||| ||||||||| || ||||||| ||||||||    
T  44913272 gtgtaaattaggtatcctctgcgcgtaactgcagagactaatctctcgagcattgtgggacccagatgggcggc-aagctctccctaagagttt 44913180  T

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Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 975 - 1079
Target Start/End: Original strand, 7242809 - 7242912
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||||||| ||  |  |||||||| || | | ||||||| ||||||||||| | ||||||||||||||||||| ||||    
T  7242809 gcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtaga-ctctccctaagagttttaacgttgctgcatgtccaagactggattc 7242907  T
Q  1075 aaacc 1079  Q
     ||||    
T  7242908 gaacc 7242912  T

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Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 975 - 1055
Target Start/End: Original strand, 42297444 - 42297523
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctg 1055  Q
    |||||||| ||||||||||||||||| ||||||  |||||||||| |||| | |||||||| ||||||||||| |||||||    
T  42297444 gcaactgcggagactaatccctcgagcattgtgagacccaaatggacggc-agactctccctaagagttttaacgctgctg 42297523  T

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Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 975 - 1044
Target Start/End: Complemental strand, 15642594 - 15642526
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttt 1044  Q
    |||||||| |||| ||||| |||||| ||||||| ||||||||||||||| |||||||||| ||||||||    
T  15642594 gcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggc-aaactctccctaagagttt 15642526  T

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Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 975 - 1104
Target Start/End: Original strand, 18428144 - 18428271
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||||||||||||||||||||| |||||||   |||||||| | || | |||||||| || ||||||||  |||||||||| |||||  || ||||    
T  18428144 gcaactgcagagactaatccctcgagcattgtgg-ggccaaatggacagc-agactctccctaaaagttttaacactgctgcatgcccaaggttggattc 18428241  T
Q  1075 aaacccaagaccttggttaagctagaagag 1104  Q
     || |||  ||||||||||||||| |||||    
T  18428242 gaatccagaaccttggttaagctacaagag 18428271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1049 - 1106
Target Start/End: Complemental strand, 52957480 - 52957423
Alignment:
Q  1049 gctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||| | |||||||||||||||||||||||||||||||  ||| |||||||    
T  52957480 gctgctgcatgcctaagactgaattcaaacccaagaccttggttatactaaaagagac 52957423  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1037 - 1106
Target Start/End: Complemental strand, 29124823 - 29124754
Alignment:
Q  1037 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||| ||||||||||| ||||  ||| |||| ||| || |||| |||||||||||||||||||    
T  29124823 aagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagac 29124754  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1026 - 1103
Target Start/End: Original strand, 31733743 - 31733820
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 1103  Q
    |||||||||| |||||||||||  |||||||||| | ||  |||||||| ||||||| || ||||||||| |||||||    
T  31733743 aaactctccctaagagttttaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 31733820  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 987 - 1047
Target Start/End: Original strand, 32883561 - 32883620
Alignment:
Q  987 actaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaa 1047  Q
    ||||||||||||||| ||||||   ||||||||||||| |||||||||| |||||||||||    
T  32883561 actaatccctcgagtcttgtggggtccaaatgggcggc-aaactctccctaagagttttaa 32883620  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 28724811 - 28724682
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||| ||| ||||||||||||||||  ||||| | || ||||||| ||||| | |||| || |||||||||||  ||| ||||||| |||| ||||||||    
T  28724811 gcaattgcggagactaatccctcgaacattgtaggactcaaatggacggcaga-ctcttcctaagagttttaacactgttgcatgttcaaggctgaattc 28724713  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     || ||| || |||  ||||||||||||||||    
T  28724712 gaatccagga-ctttattaagctagaagagac 28724682  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 977 - 1023
Target Start/End: Complemental strand, 2044534 - 2044488
Alignment:
Q  977 aactgcagagactaatccctcgagtattgtggaacccaaatgggcgg 1023  Q
    ||||||||||||||||| || ||| |||||||||||||||| |||||    
T  2044534 aactgcagagactaatctcttgagcattgtggaacccaaataggcgg 2044488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1074
Target Start/End: Original strand, 36522259 - 36522336
Alignment:
Q  996 tcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    ||||| ||||||| || ||||||| ||||||| ||||||| |||||||||||   ||||||||||| ||||||| ||||    
T  36522259 tcgagcattgtgggactcaaatggacggcaaa-ctctccctaagagttttaaccttgctgcatgtctaagactgtattc 36522336  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 980 - 1073
Target Start/End: Complemental strand, 15675946 - 15675854
Alignment:
Q  980 tgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaatt 1073  Q
    |||||||||||||| |||||||||||| |||   ||||||||||| ||| ||| || ||| ||||||| | ||||| ||||| |||| ||||||    
T  15675946 tgcagagactaatctctcgagtattgtagaaattaaatgggcggc-aaattcttcccaagcgttttaacgttgctgaatgtctaagattgaatt 15675854  T

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Target: chr3 (Bit Score: 67; Significance: 3e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 207 - 397
Target Start/End: Complemental strand, 40752178 - 40751988
Alignment:
Q  207 agttgtaggctgagatggttcaaccaactggatccaagaatcaacagaagagcatttacagaagaagaggaagaaagactaatgcaagcacatagaattt 306  Q
    ||||||||| ||||||||||||| || || ||||||||||| ||||||||| | || |||||||| || ||||| |||||| |    || ||| | |||     
T  40752178 agttgtaggttgagatggttcaatcagctagatccaagaattaacagaagacctttcacagaagaggaagaagagagactacttgcggctcatcggattc 40752079  T
Q  307 atggaaacaaatgggcaatgatagcaagactattcccaggaagaacagacaatgctgtgaaaaatcactggcatgttataatggcaagaaa 397  Q
    | ||||||||||||||| | ||||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||||||||| |||||    
T  40752078 acggaaacaaatgggcactaatagcaagacttttccctggtagaactgataatgctgtgaagaatcattggcatgttataatggctagaaa 40751988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 48204313 - 48204443
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| || |||||||||| ||| |||||||||||||||||| || |||  ||||||| ||| ||||||| | ||||||||| ||||| ||| ||||    
T  48204313 gcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaag-ctctccctaagggttttaacgttgctgcatgcccaaggctggattc 48204411  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||||||||||||||||||||||||||||    
T  48204412 gaacccaagaccttggttaagctagaagagac 48204443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 950 - 1106
Target Start/End: Original strand, 30995942 - 30996097
Alignment:
Q  950 ggtgtaaattagacatcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatg 1049  Q
    ||||||||  ||| |||||  ||| |||||||| ||||||||||||||||| ||||||| ||||| ||||||||| | |||||||| ||||||||||| |    
T  30995942 ggtgtaaaccagatatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggc-agactctccctaagagttttaacg 30996040  T
Q  1050 ctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||| |||||| |||||   | |||| |||||| ||||||||||||| ||||||||||    
T  30996041 ctgttgcatgcccaaggtcggattcgaacccaggaccttggttaagatagaagagac 30996097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 25224838 - 25224708
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||| ||| ||||||| ||| |||||||||||||   |||||  ||||||||||| ||||||||||  |||| |||  ||||    
T  25224838 gcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagt-tctccttaagagttttaacgctgctgcattcccaaaacttgattc 25224740  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  25224739 gaacccaggaccttggttaagctagaagagac 25224708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 964 - 1099
Target Start/End: Complemental strand, 27763871 - 27763737
Alignment:
Q  964 atcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtcca 1063  Q
    ||||| |||| |||||||| ||||||||||||||||| ||||||| || ||||||| |||| | |||||||| |||||||||||  ||| || ||| |||    
T  27763871 atcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggc-agactctccctaagagttttaacactgttgtatgccca 27763773  T
Q  1064 agactgaattcaaacccaagaccttggttaagctag 1099  Q
    || ||| |||| |||||| |||||||||||||||||    
T  27763772 aggctggattcgaacccaggaccttggttaagctag 27763737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 976 - 1064
Target Start/End: Complemental strand, 20861386 - 20861299
Alignment:
Q  976 caactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaa 1064  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||| |  ||||||| ||||||||||| ||||||||||| ||||    
T  20861386 caactgcggagactaatccctcgagcattatggaacccaaatgggcggc-aggctctccctaagagttttaacgctgctgcatgcccaa 20861299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 38331267 - 38331137
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||||||| |  ||||||| ||||||||||||||| || ||||| | ||||||||||| |||||||||||  |||   || ||||    
T  38331267 gcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggc-aagctctctctaagagttttaacgctgctgcatgctcaaagttggattc 38331169  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
    |||| || ||| ||||||||| ||||||||||    
T  38331168 aaactcaggacattggttaagttagaagagac 38331137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 976 - 1105
Target Start/End: Complemental strand, 22288373 - 22288245
Alignment:
Q  976 caactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattca 1075  Q
    ||||||||||||||||| ||| |||||||||| ||| ||||||| || |||   |||||| |||||||||||   || ||||||| |||| ||||||||     
T  22288373 caactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagt-tctccctaagagttttaacattgttgcatgttcaaggctgaattcg 22288275  T
Q  1076 aacccaagaccttggttaagctagaagaga 1105  Q
    ||| || ||| ||||||||| |||||||||    
T  22288274 aactcaggactttggttaagttagaagaga 22288245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 977 - 1106
Target Start/End: Complemental strand, 14352694 - 14352563
Alignment:
Q  977 aactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaa---tgctgc-tgcatgtccaagactgaat 1072  Q
    |||||| |||||||||||||||||||||| || | |||||||| || |||  ||||||  |||||||||||   |||||| |||||||||||| ||| ||    
T  14352694 aactgcggagactaatccctcgagtattg-ggtatccaaatggacgacaag-ctctccgtaagagttttaacactgctgcatgcatgtccaaggctggat 14352597  T
Q  1073 tcaaacccaagaccttggttaagctagaagagac 1106  Q
    || |||| || | |||||||||||||||||||||    
T  14352596 tcgaaccgaatatcttggttaagctagaagagac 14352563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 964 - 1106
Target Start/End: Complemental strand, 40294762 - 40294621
Alignment:
Q  964 atcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtcca 1063  Q
    |||||||| | |||||||| ||||||||||| ||||||||||||| |  |||||| ||||| || || |||| |||||||||||   || ||||| ||||    
T  40294762 atcctttgtgcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggc-aagctttccctaagagttttaacattgttgcatatcca 40294664  T
Q  1064 agactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    || ||| |||| ||| || ||||||| ||||| |||| |||||    
T  40294663 aggctggattcgaactcaggaccttgattaaggtagaggagac 40294621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 975 - 1092
Target Start/End: Complemental strand, 39950351 - 39950235
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||| ||||| ||||| | | |||||||  || || |  |||||| || | |||||| |||||||||||||||| |||| ||||    
T  39950351 gcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagat-tctccctaaaaattttaacgctgctgcatgtccaaaactggattc 39950253  T
Q  1075 aaacccaagaccttggtt 1092  Q
     |||||||||||||||||    
T  39950252 taacccaagaccttggtt 39950235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 985 - 1106
Target Start/End: Complemental strand, 15283200 - 15283084
Alignment:
Q  985 agactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaaga 1084  Q
    ||||||||| |||||| ||||||| ||||||||||||||| || || |||  ||||||||||| | ||||||||| ||| ||||| |||| |||||   |    
T  15283200 agactaatctctcgagcattgtgggacccaaatgggcggc-aatctttccataagagttttaa-gatgctgcatgcccatgactggattcgaaccc---a 15283106  T
Q  1085 ccttggttaagctagaagagac 1106  Q
    |||| |||||| ||||||||||    
T  15283105 ccttagttaagttagaagagac 15283084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 48210962 - 48211092
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||  ||| ||||||||||||||| ||| |||| | ||||||  ||||||  ||||||||||| | |||||||||  |||| ||| ||||    
T  48210962 gcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaag-ctctccataagagttttaacgttgctgcatgctcaaggctggattc 48211060  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||| || |||||| ||||| ||||||||||    
T  48211061 gaaccaaaaaccttgattaagttagaagagac 48211092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 975 - 1074
Target Start/End: Complemental strand, 55123236 - 55123138
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    ||||||||  |||||||||||||||| ||||||  |||||||||||  || || ||||||| |||| |||||| |||||||||| |||||| ||| ||||    
T  55123236 gcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagc-aagctctccctaagaattttaacgctgctgcatttccaaggctggattc 55123138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 975 - 1025
Target Start/End: Complemental strand, 8757483 - 8757433
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggca 1025  Q
    |||||||| ||||||||||||||||| ||||||| |||||||| |||||||    
T  8757483 gcaactgcggagactaatccctcgagcattgtgggacccaaataggcggca 8757433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 996 - 1058
Target Start/End: Complemental strand, 25739205 - 25739144
Alignment:
Q  996 tcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcat 1058  Q
    |||||| || ||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  25739205 tcgagtcttatgggacccaaatgggcgg-aaaactctccctaagagttttaatgctcctgcat 25739144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1037 - 1106
Target Start/End: Complemental strand, 54877911 - 54877842
Alignment:
Q  1037 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||| | || || ||| ||||| |||||||||||| ||| |||||||||||| ||||||||||    
T  54877911 aagagttttaacgttgttggatgcccaaggctgaattcaaactcaaaaccttggttaagttagaagagac 54877842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1026 - 1106
Target Start/End: Original strand, 50518606 - 50518686
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    |||||||| | |||||||| || | || ||||||||||||||||||||| ||| || ||| || |||||| ||||||||||    
T  50518606 aaactctctctaagagtttcaacgttgttgcatgtccaagactgaattcgaacacatgacattagttaagttagaagagac 50518686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 950 - 1065
Target Start/End: Complemental strand, 1642770 - 1642656
Alignment:
Q  950 ggtgtaaattagacatcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatg 1049  Q
    |||||||||  || |||||  ||| |||||||| || ||||||||||| |||||||||| |||||||||| |||  | |||||||| || ||||||||      
T  1642770 ggtgtaaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacgg-tagactctccctaaaagttttaaca 1642672  T
Q  1050 ctgctgcatgtccaag 1065  Q
    | ||||||||| ||||    
T  1642671 cggctgcatgttcaag 1642656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1037 - 1106
Target Start/End: Complemental strand, 22755722 - 22755653
Alignment:
Q  1037 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||||||||||||||| ||||| ||| |||| |||| |  || |||||||| |||||| ||||    
T  22755722 aagagttttaatgctgctgcatgcccaaggctggattcgaacctagtactttggttaacctagaatagac 22755653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1009 - 1106
Target Start/End: Complemental strand, 38088740 - 38088644
Alignment:
Q  1009 aacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||| ||||||||   |||||| ||||||||||| ||| ||||||| ||||  ||| |||| ||||    |||||||||||||||||||||||    
T  38088740 aacccaaataggcggcaagt-tctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagac 38088644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 26470 - 26340
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||| |||||  ||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| ||||    
T  26470 gcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattc 26372  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  26371 gaacccaggaccttggttaagctagaagagac 26340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 42745118 - 42745248
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||  |||||||||||||||| ||| ||| | ||||||| |||||||||||   ||||||||| ||||| ||| ||||    
T  42745118 gcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcaga-ctctccctaagagttttaacattgctgcatgcccaaggctggattc 42745216  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     ||||||||||||||||||||||| |||||||    
T  42745217 gaacccaagaccttggttaagctataagagac 42745248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 5394535 - 5394406
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||||| |||| ||||||| ||||||||||||||||   ||||||| |||||||||||   ||||||||| ||||| ||| ||||    
T  5394535 gcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcagg-ctctccctaagagttttaaca-tgctgcatgcccaaggctggattc 5394438  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  5394437 gaacccaggaccttggttaagctagaagagac 5394406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 984 - 1106
Target Start/End: Original strand, 44752205 - 44752326
Alignment:
Q  984 gagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaag 1083  Q
    ||||||||||||||||||||||| |||||||||| || |||||  ||||||||||||||||||| | || |||||| ||||||||  |||| |||| | |    
T  44752205 gagactaatccctcgagtattgtagaacccaaattggtggcaag-ctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctagg 44752303  T
Q  1084 accttggttaagctagaagagac 1106  Q
    |  ||||||||||||||||||||    
T  44752304 agtttggttaagctagaagagac 44752326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 17981636 - 17981507
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||| |||||| ||||||| |||||||| | ||||||  ||||||| ||||||||||||| || |||||| ||||||||| |||     
T  17981636 gcaactgcggagactaatctctcgagcattgtgggacccaaattg-cggcaag-ctctccctaagagttttaatgttgttgcatgcccaagactggattt 17981539  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
    |||  || ||| ||||||||||||||||||||    
T  17981538 aaattcaggactttggttaagctagaagagac 17981507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 18105365 - 18105494
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||||||||||  || |||||||||||||   ||||||  |||| |||||| | || |||||| ||||| ||| ||||    
T  18105365 gcaactgc-gagactaatccctcgagtattgtgagactcaaatgggcggcagg-ctctccataagaattttaacgttgttgcatgcccaaggctggattc 18105462  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| ||||||||||||||||||||||||    
T  18105463 gaacccaggaccttggttaagctagaagagac 18105494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 975 - 1106
Target Start/End: Original strand, 31579231 - 31579361
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| || |||||| ||||||| ||||||| ||  |||||||||||| | ||||||| || ||||||||  ||| |||||| ||||| ||| ||||    
T  31579231 gcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcaga-ctctccctaaaagttttaacactgttgcatgcccaaggctggattc 31579329  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||||||||||| ||||||||||||||||    
T  31579330 gaacccaagaccttgattaagctagaagagac 31579361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 975 - 1101
Target Start/End: Original strand, 14121884 - 14122009
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||| || |||||||||||||||| ||||||| || ||||||||||||||   |||| | |||| |||||| | |||||||||| |||||||||||||    
T  14121884 gcaacttcatagactaatccctcgagcattgtgggactcaaatgggcggcaagt-tctctctaagaattttaacgttgctgcatgttcaagactgaattc 14121982  T
Q  1075 aaacccaagaccttggttaagctagaa 1101  Q
    |||| || |||| |||||| |||||||    
T  14121983 aaactcaggaccctggttaggctagaa 14122009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1029 - 1106
Target Start/End: Original strand, 12133285 - 12133362
Alignment:
Q  1029 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||| ||||||||||| | ||||||||||||||| ||| |||| |||||| ||||||| ||||||||||||||||    
T  12133285 ctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagac 12133362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 999 - 1106
Target Start/End: Complemental strand, 993868 - 993763
Alignment:
Q  999 agtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagcta 1098  Q
    |||||||| | |||||||||||||||||   |||||| ||||||||||  ||||||||||| |||||  ||||||| |||||| ||||||||||||||||    
T  993868 agtattgtaggacccaaatgggcggcaagt-tctccctaagagttttac-gctgctgcatgcccaaggttgaattcgaacccaggaccttggttaagcta 993771  T
Q  1099 gaagagac 1106  Q
     |||||||    
T  993770 taagagac 993763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1029 - 1106
Target Start/End: Original strand, 44732628 - 44732705
Alignment:
Q  1029 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| |||||||||||||||| |||||||    
T  44732628 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagac 44732705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 987 - 1105
Target Start/End: Original strand, 9438150 - 9438267
Alignment:
Q  987 actaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagacc 1086  Q
    ||||||||||| || ||||||| || |||||||||||||    ||| || |||||||||||  |||||||||| ||||| ||| |||| |||| |||||     
T  9438150 actaatccctcaagcattgtgggacacaaatgggcggcaggt-tcttcctaagagttttaaccctgctgcatgcccaaggctggattcgaaccaaagact 9438248  T
Q  1087 ttggttaagctagaagaga 1105  Q
    |||||||||||| ||||||    
T  9438249 ttggttaagctaaaagaga 9438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 975 - 1025
Target Start/End: Complemental strand, 25423883 - 25423833
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggca 1025  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  25423883 gcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggca 25423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 985 - 1086
Target Start/End: Original strand, 37180013 - 37180108
Alignment:
Q  985 agactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaaga 1084  Q
    |||||||||||||||||||||||| || |||||||||||| | |||||||| |||||     |  ||| |||||||||||||||| |||| |||||||||    
T  37180013 agactaatccctcgagtattgtgggactcaaatgggcggc-acactctccctaagag-----acactgttgcatgtccaagactggattcgaacccaaga 37180106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1026 - 1106
Target Start/End: Original strand, 13153975 - 13154055
Alignment:
Q  1026 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||| || ||||||||||| | |||||| |||||||||||| |||||||| ||| || | ||||||| ||||||||||    
T  13153975 aaactcttcctaagagttttaacgttgctgcgtgtccaagactgtattcaaactcaaaacttgggttaagttagaagagac 13154055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1032 - 1103
Target Start/End: Original strand, 37568785 - 37568856
Alignment:
Q  1032 tcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 1103  Q
    |||| |||||||||||  |||||||||| | ||| ||| |||| |||||| |||||||||||||||||||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaaga 37568856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1013 - 1084
Target Start/End: Complemental strand, 39314547 - 39314477
Alignment:
Q  1013 caaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaaga 1084  Q
    ||||||||||||||| ||||||| | ||||||||| || |||||||| |||| ||||||||||||| |||||    
T  39314547 caaatgggcggcaaa-ctctccctacgagttttaacgcagctgcatgcccaaaactgaattcaaactcaaga 39314477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1014 - 1106
Target Start/End: Complemental strand, 34483561 - 34483471
Alignment:
Q  1014 aaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    |||||||||| |||||| || | ||||||||||| |||| ||||||||||||||||||||  || |||  || ||||||||||||||| ||||    
T  34483561 aaatgggcgg-aaaactatctctaagagttttaacgctgttgcatgtccaagactgaatttgaa-ccagaactttggttaagctagaaaagac 34483471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 975 - 1026
Target Start/End: Complemental strand, 17655800 - 17655749
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaa 1026  Q
    |||||||| |||||||||||||||||  |||||||| ||||||||| |||||    
T  17655800 gcaactgcggagactaatccctcgagccttgtggaatccaaatgggtggcaa 17655749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 975 - 1078
Target Start/End: Complemental strand, 38743877 - 38743775
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| |||||||||||||  || ||||||  | ||||||| ||||| || ||||||| || |||||||| | ||||||||| ||||||||  ||||    
T  38743877 gcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggc-aagctctccccaaaagttttaacgttgctgcatgcccaagactagattc 38743779  T
Q  1075 aaac 1078  Q
    ||||    
T  38743778 aaac 38743775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 976 - 1026
Target Start/End: Original strand, 37092198 - 37092248
Alignment:
Q  976 caactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaa 1026  Q
    ||||||| ||||||||||||||||| | ||||| |||||||||| ||||||    
T  37092198 caactgcggagactaatccctcgagcactgtgggacccaaatggacggcaa 37092248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1029 - 1106
Target Start/End: Complemental strand, 7157584 - 7157507
Alignment:
Q  1029 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||| ||||||||||| | ||||||||| ||||| ||  |||| |||| | || |||||||||| ||||||||||    
T  7157584 ctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagac 7157507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 984 - 1045
Target Start/End: Original strand, 12233086 - 12233146
Alignment:
Q  984 gagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagtttt 1045  Q
    ||||||||||||||||| |||||| |||  ||||||||||| |||||||| | |||||||||    
T  12233086 gagactaatccctcgagcattgtgaaacttaaatgggcggc-aaactctctctaagagtttt 12233146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 964 - 1025
Target Start/End: Complemental strand, 14551624 - 14551563
Alignment:
Q  964 atcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggca 1025  Q
    ||||| |||| |||||||| |||| |||||||||||| ||||| | |||||||| |||||||    
T  14551624 atcctctgcgcgcaactgcggagattaatccctcgagcattgtaggacccaaataggcggca 14551563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1049 - 1106
Target Start/End: Complemental strand, 28366015 - 28365958
Alignment:
Q  1049 gctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    ||||||||||| ||||| ||| |||| ||| || ||||||||||||| ||||||||||    
T  28366015 gctgctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagac 28365958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 977 - 1106
Target Start/End: Complemental strand, 25084171 - 25084043
Alignment:
Q  977 aactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaa 1076  Q
    ||||||| ||||||||| |||||| ||||||||||  ||||||  | |||  ||||||| |||||||||||   |||||||||||||||||||||||| |    
T  25084171 aactgcatagactaatctctcgagcattgtggaacttaaatggatgacaag-ctctccctaagagttttaacattgctgcatgtccaagactgaattcga 25084073  T
Q  1077 acccaagaccttggttaagctagaagagac 1106  Q
    || |||||| ||| ||||||||||||||||    
T  25084072 actcaagactttgattaagctagaagagac 25084043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 12411287 - 12411157
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||  |||||||||||||| || ||||||| ||  |||||||||||| | |||| || ||||||||||| ||||||||||| ||||| ||| ||||    
T  12411287 gcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcaga-ctcttcctaagagttttaacgctgctgcatgcccaaggctggattc 12411189  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     ||| || ||||||||||||| ||||||||||    
T  12411188 gaactcaggaccttggttaagttagaagagac 12411157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 976 - 1106
Target Start/End: Original strand, 21028982 - 21029115
Alignment:
Q  976 caactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgt------ccaagactg 1069  Q
    ||||||| ||||||||||||| |||  |||||| ||||||||||||||||||   ||| | ||||||||||| |||||||||| |      ||||| |||    
T  21028982 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaa---ctctctaagagttttaacgctgctgcatctgcatgcccaaggctg 21029078  T
Q  1070 aattcaaacccaagaccttggttaagctagaagagac 1106  Q
     |||| |||||||||||||||||||||||||||||||    
T  21029079 gattcgaacccaagaccttggttaagctagaagagac 21029115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 21910343 - 21910214
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||| ||||||||||| ||| ||||| |||||| | ||||| | ||||||||||| | || |||||| ||||| ||| ||||    
T  21910343 gcaactgcggagactaatccct-gagtattgtgggacctaaatgagcggcaga-ctctctctaagagttttaacgatgttgcatgcccaaggctggattc 21910246  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| || |||||||||||||||||||||    
T  21910245 gaacccaggatcttggttaagctagaagagac 21910214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 28099382 - 28099252
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| ||||||||||||||||| ||| |||||| ||||||| || | ||| |||||| || ||||||||  |||||||||| ||||| ||| ||||    
T  28099382 gcaactgcggagactaatccctcgagcattatggaactcaaatggacgac-aaattctccctaaaagttttaacactgctgcatgcccaaggctggattc 28099284  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
     |||||| |||||| |||||| ||||||||||    
T  28099283 gaacccaggaccttagttaaggtagaagagac 28099252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 986 - 1106
Target Start/End: Complemental strand, 278519 - 278401
Alignment:
Q  986 gactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagac 1085  Q
    ||||||||||| |||| |||||| ||| |||||| ||||||| ||||||  ||||||||||||| || |||||| ||||  ||| |||||||| ||||||    
T  278519 gactaatcccttgagttttgtgggacctaaatggacggcaaa-ctctccataagagttttaatg-tgttgcatgcccaaagctggattcaaactcaagac 278422  T
Q  1086 cttggttaagctagaagagac 1106  Q
    ||| |||||||||||||||||    
T  278421 cttagttaagctagaagagac 278401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 975 - 1106
Target Start/End: Complemental strand, 28933277 - 28933147
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||| || |||| || |||||| ||||||||||||||||||||||| |||||||| | |||| |||||| | || |||||||| ||| ||||||||    
T  28933277 gcaactgcggatactattcactcgagcattgtggaacccaaatgggcggc-aaactctctctaagaattttaacgatgttgcatgtctaaggctgaattc 28933179  T
Q  1075 aaacccaagaccttggttaagctagaagagac 1106  Q
    |||  || ||| || |||||| || |||||||    
T  28933178 aaaatcaggactttagttaagataaaagagac 28933147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 987 - 1105
Target Start/End: Complemental strand, 423782 - 423665
Alignment:
Q  987 actaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagacc 1086  Q
    |||||||||||||| ||||||| || ||||||| |||||    | || | ||||||||||| ||||| ||||| ||||| ||| |||||||||||| |||    
T  423782 actaatccctcgagcattgtgggactcaaatggacggcagtt-tatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaacc 423684  T
Q  1087 ttggttaagctagaagaga 1105  Q
    |||||||| ||||||||||    
T  423683 ttggttaaactagaagaga 423665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 975 - 1081
Target Start/End: Original strand, 12836899 - 12837004
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||  |||||||||||||| || ||||||| |||||||||||||||  | ||||||| ||||||||||| ||||||||||| | ||| ||| ||||    
T  12836899 gcaactggggagactaatccctcaagcattgtgggacccaaatgggcggc-gagctctccctaagagttttaacgctgctgcatgcctaaggctggattc 12836997  T
Q  1075 aaaccca 1081  Q
     ||||||    
T  12836998 gaaccca 12837004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 964 - 1106
Target Start/End: Original strand, 31107484 - 31107625
Alignment:
Q  964 atcctttgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtcca 1063  Q
    ||||| |||| |||| | |||||||||||| ||||| |||||||| |  ||||||| ||| ||  ||||||||||||||||||| |||| ||||||||||    
T  31107484 atcctctgcgcgcaattacagagactaatctctcgaatattgtgggaatcaaatggacggtaag-ctctcccaaagagttttaacgctgttgcatgtcca 31107582  T
Q  1064 agactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    |  ||| |||| ||| ||  ||||| |||||| ||||||||||    
T  31107583 atgctggattcgaactcagaaccttagttaagttagaagagac 31107625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 975 - 1074
Target Start/End: Complemental strand, 31412261 - 31412163
Alignment:
Q  975 gcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 1074  Q
    |||||||  |||||||||  |||||| ||||||||||||||||||||||| | |||||||| |||||||||||  |||||||| | ||||  ||||||||    
T  31412261 gcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggc-agactctccctaagagttttaacactgctgcacgcccaaagctgaattc 31412163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1040 - 1106
Target Start/End: Original strand, 15614639 - 15614705
Alignment:
Q  1040 agttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    |||||||| | |||| ||||||||||||||||||| |||||| ||| ||||||||| ||||||||||    
T  15614639 agttttaacgttgctacatgtccaagactgaattcgaacccatgacattggttaagttagaagagac 15614705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 994 - 1106
Target Start/End: Complemental strand, 5944962 - 5944851
Alignment:
Q  994 cctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggtta 1093  Q
    ||||||||||||| | | | |||||||||||||| ||||||| || ||||||||   || | |||||| |||||||||||| ||| || |||||||||||    
T  5944962 cctcgagtattgtaggatctaaatgggcggcaaa-ctctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggtta 5944864  T
Q  1094 agctagaagagac 1106  Q
    || || |||||||    
T  5944863 agttaaaagagac 5944851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 976 - 1058
Target Start/End: Original strand, 21028845 - 21028924
Alignment:
Q  976 caactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcat 1058  Q
    ||||||| ||||||||||||| |||  |||||| ||||||||||||||||||   ||| | ||||||||||| ||||||||||    
T  21028845 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaa---ctctctaagagttttaacgctgctgcat 21028924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 970 - 1078
Target Start/End: Complemental strand, 24450076 - 24449969
Alignment:
Q  970 tgcgagcaactgcagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactg 1069  Q
    |||| |||||| || ||||||||| ||| ||| || |||||| |||||||| |||||| ||||||  |||| ||||||||||||| |||||| |||  ||    
T  24450076 tgcgcgcaactccaaagactaatctctcaagtcttatggaactcaaatgggtggcaaa-ctctccttaagaattttaatgctgctacatgtcgaagcatg 24449978  T
Q  1070 aattcaaac 1078  Q
    |||||||||    
T  24449977 aattcaaac 24449969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 982 - 1069
Target Start/End: Complemental strand, 29986880 - 29986794
Alignment:
Q  982 cagagactaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactg 1069  Q
    |||||| ||||| ||||||| |||||| || |||||| |||||||| |||||| |||||||||||| | ||||| ||| |||||||||    
T  29986880 cagagattaatctctcgagttttgtgggactcaaatgagcggcaaa-ctctcctaaagagttttaacgttgctgtatgaccaagactg 29986794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 988 - 1105
Target Start/End: Original strand, 7468556 - 7468671
Alignment:
Q  988 ctaatccctcgagtattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagacct 1087  Q
    |||||||||||| | |||||  |  |||||||| |||||| |||||| || |||||||| |||||||||||| |||| ||||  ||||||| || |||||    
T  7468556 ctaatccctcgaatcttgtgagattcaaatgggtggcaaa-ctctcctaa-gagttttactgctgctgcatgcccaaaactggtttcaaactcaggacct 7468653  T
Q  1088 tggttaagctagaagaga 1105  Q
    || ||||| |||| ||||    
T  7468654 tgattaaggtagaggaga 7468671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1040 - 1106
Target Start/End: Original strand, 32330 - 32396
Alignment:
Q  1040 agttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 1106  Q
    |||||||| ||||||||||  |||||| || |||| ||||||  |||||||| ||||||||||||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagac 32396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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