View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_2D_low_11 (Length: 679)
Name: NF9960_2D_low_11
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 20 - 665
Target Start/End: Complemental strand, 28484517 - 28483877
Alignment:
| Q |
20 |
atgttggtagaacccttatccaaaattttatcaatgaaacaagatataaaatgagggaataggcaaattgttcatcgaaattgtaagtgtctgtcaaaat |
119 |
Q |
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| T |
28484517 |
atgttggtagaacccttatccaaaagtttatcaatgaaacaagatataaaatgagggaataggcaaattgttcatcgaaattgtaagtgtctgtcaaaat |
28484418 |
T |
|
| Q |
120 |
agcttctgaccttttcaaattggtaaatatattattaaaattgtaatgtttcattcaaaatagtccttatattaacttataccgtcagtgactatgacgt |
219 |
Q |
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| T |
28484417 |
agcttctgaccttttcaaattggtaaatatattattaaaattgtaacgtttcattcaaaatagtccttatattaacttataccgtcagtgactatgacgt |
28484318 |
T |
|
| Q |
220 |
acaatgttaactgaagatgcgacccctcaacattgattcaaatcaatatgctaacacgagggactaattttcttatgaaatttaattctcttatggacta |
319 |
Q |
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| T |
28484317 |
acaatgttaa-----gatgcgacccctccacattgattcaaatcaatatgctaacacgagggactaattttcttatgaaatttaattctcttatggacta |
28484223 |
T |
|
| Q |
320 |
gtttgccattaattagtccatgcataattgcatttcatggggaaattaatccctagagagcttgtgttgacgtgtgaccaacatttagcgtgacatgtca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28484222 |
gtttgccattaattagtccatgcataattgcatttcatggggaaattaatccctagagagcttgtgttgacgtgtgaccaacatttagcgtgacatgtca |
28484123 |
T |
|
| Q |
420 |
ctcatagcctctaacaatagaatttaacgagtggatcattttgaatagcgtttttcaatttcgagtatgtatctttttcttaaaaacgaaggattttgat |
519 |
Q |
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| T |
28484122 |
ctcatagcctccaacaatagaatttaacgagtggatcattttgaatggcgtttttcaatttcgaggatgtatctttttcttaaaaacgaaggattttgat |
28484023 |
T |
|
| Q |
520 |
tggtggtttcaatttcgaagaccaatttttgtattcactcaaatataaaatactgaaccataaaatcttcattgaaataccaaacaaaagaatgtaatta |
619 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28484022 |
tggtggtttcaatttcgaagaccaatttttctattcactcaaatataaaatactgaaccataaaatcttcattgaaataccaaacaaaagaatgtaatta |
28483923 |
T |
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| Q |
620 |
aagcacatcaatgattttcccttgcctgtattgagaagtttcatct |
665 |
Q |
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| T |
28483922 |
aagcacatcaatgattttcccttgcctgtattgagaagtttcatct |
28483877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 31586031 - 31586144
Alignment:
| Q |
84 |
aaattgttcatcgaaattgtaagtgtctgtcaaaatagcttctgaccttttcaaattggtaaatatattattaaaattgtaatgtttcattcaaaatagt |
183 |
Q |
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|||||| ||||||||| ||||||||| |||||| ||||| ||| ||| |||||||||||| || ||| ||||||||| |||||| |||||||||| |
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| T |
31586031 |
aaattggtcatcgaaactgtaagtgtaggtcaaagtagctcatgatttttgagaattggtaaatacatcattgaaattgtaaagtttcagtcaaaatagt |
31586130 |
T |
|
| Q |
184 |
ccttatattaactt |
197 |
Q |
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|| | ||||||||| |
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| T |
31586131 |
ccatctattaactt |
31586144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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