View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_2D_low_12 (Length: 627)
Name: NF9960_2D_low_12
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 16 - 606
Target Start/End: Complemental strand, 41729427 - 41728837
Alignment:
| Q |
16 |
atcaggaatttcaccagaaagggaattatttgcaagattcaaaccagcaagctgagtcaaattagaaagggaaagcggaatagtaccgttgaatttgtta |
115 |
Q |
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| T |
41729427 |
atcaggaatttcaccagaaagggaattatttgcaaggttcaaaccagcaagctgagtcaaattagaaagcgaaagcggaatagtaccgttgaatttgtta |
41729328 |
T |
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| Q |
116 |
ttagacaaattaacaacagtaagattcttccaaactgagaaatcaggcaaaggcccagataaattattggactgaagataaagaaaagacaagtttttta |
215 |
Q |
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| T |
41729327 |
ttagacaaattaacaacagtaagattcttccaaactgagaaatcaggcaaaggcccagataaattattggactgaagataaagaaaagacaagtttttta |
41729228 |
T |
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| Q |
216 |
gattggaaaaatcacttggaaaaaacccagatattaaattggatctaagactaagaatttcaagagctgaaaggttactgatagtatttggtggaatatt |
315 |
Q |
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| T |
41729227 |
gattggaaaaatcacttggaaaaaacccagatattaaattggatctaagactaagaatttcaagagctgaaaggttactgatagtatttggtggaatatt |
41729128 |
T |
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| Q |
316 |
gccatgaaatccgacaccaggtaaacggatagctataactctagacctatcttcattgcaagtaacaccagtccaattatcacaaacagaagaaatttga |
415 |
Q |
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| T |
41729127 |
gccatgaaatccgacaccaggtaaacggatagctataactctagacctatcttcattgcaagtaacaccagtccaattatcacaaacagaagaactttga |
41729028 |
T |
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| Q |
416 |
ttccaattcaaagtccttgaagggggaaacttgttcacaaaatcaagcaaaacctctttatcttcaacagggtcacaatttccttgccatatacacaaca |
515 |
Q |
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| T |
41729027 |
ttccaattcaaagtccttgaagggggaaacttgttcacaaaatcaagcaaaacctctttatcttcaacagggtcacaatttccttgccatatacacaaca |
41728928 |
T |
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| Q |
516 |
atatgcataaaatgtaaagaaatttcatgtttttccacttcaagtagtttctgcaataagcttaatgctgcatagattcaaatgaaagtac |
606 |
Q |
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| T |
41728927 |
atatgcataaaatgtaaagaaatttcatgtttttccacttcaagtagtttctgcaataagcttaatgctgcatagattcaaatgaaagtac |
41728837 |
T |
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