View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_2D_low_14 (Length: 540)
Name: NF9960_2D_low_14
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 13 - 524
Target Start/End: Complemental strand, 45076339 - 45075828
Alignment:
| Q |
13 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45076339 |
tttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
45076240 |
T |
|
| Q |
113 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
45076239 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagattctgtcattcttgcatctcaggtata |
45076140 |
T |
|
| Q |
213 |
tataatcattatacaaaaggacttttgttttgaggaatttttaaaaagtctataatcaattaaagggacttttatatgagtcaggatgaatcagaatggc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
45076139 |
tataatcattatacaaaaggacttttgttttgaggaatttttaaaaagtctataatcaattaaagggacgtttatatgattcaggatgaatcagaatggc |
45076040 |
T |
|
| Q |
313 |
ctcaattccctgttttaccttcttatggaagtggaaggaatgcatctgatggaaggtttagcagtctcgtttttggaactaacctcactgatgttataat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45076039 |
ctcaattccctgttttaccttcttatggaagtggaaggaatgcatctgatggaaggtttagcagtctcgtttttggaactaacctcactgatgttataat |
45075940 |
T |
|
| Q |
413 |
tactggtaactatttagataaattgatagctatgccattattaaaatttgtcaagcttatattaaaatttgatcaattgaattttgttcataaggtaaca |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
45075939 |
tactggtaactatttagataaattgatagctatgccattattaaaatttgtcaagcttatattaaaatttgatctattgaattttgttcataaggtaaca |
45075840 |
T |
|
| Q |
513 |
atgggacaattg |
524 |
Q |
| |
|
|||||||||||| |
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|
| T |
45075839 |
atgggacaattg |
45075828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 524
Target Start/End: Complemental strand, 45068702 - 45068211
Alignment:
| Q |
13 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
112 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45068702 |
tttggtgctgttggtgacggcaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
45068603 |
T |
|
| Q |
113 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
45068602 |
ttgttccaccaggtaaatggctaacaggaagcttcaatctcacaagccatttcactctttttctccaaaagggtgctgtcattcttgcatctcaggtata |
45068503 |
T |
|
| Q |
213 |
tataatcattatacaaaaggacttttgttttgaggaatttttaaaaagtctataatcaattaaagggacttttatatgagtcaggatgaatcagaatggc |
312 |
Q |
| |
|
||| ||| ||||||||||||| | |||||| |||| | ||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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|
| T |
45068502 |
----------atataaa--gacttttgttttgtagtattttttaaaattttataatcaattaaagggtcatttatatgatacaggatgaatcagaatggc |
45068415 |
T |
|
| Q |
313 |
ctcaattccctgttttaccttcttatggaagtggaaggaatgcatctgatggaaggtttagcagtctcgtttttggaactaacctcactgatgttataat |
412 |
Q |
| |
|
|| |||| || ||||||| ||||||||||| | || ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |
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|
| T |
45068414 |
ctaaattatcttttttaccatcttatggaagagaaaaagatgcacctgatggaaggtttagtagtctcatttttggaactaacctcactgatgttgtaat |
45068315 |
T |
|
| Q |
413 |
tactggtaactatttagataaattgatagctatgccattattaaaatttgtcaagcttatattaaaatttgatcaattgaattttgttcataaggtaaca |
512 |
Q |
| |
|
||| ||||||||||| ||||||| ||||| ||||||||||| |||| ||| |||||||||||||| |||||||||| | |||||||||||| |
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|
| T |
45068314 |
taccggtaactatttgcataaattaatagc--------tattaaaatttatcaaacttcaattaaaatttgatctattgaattttctacataaggtaaca |
45068223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 45083754 - 45083549
Alignment:
| Q |
13 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45083754 |
tttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
45083655 |
T |
|
| Q |
113 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45083654 |
ttgttccaccaggtaaatggctaactggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
45083555 |
T |
|
| Q |
213 |
tataat |
218 |
Q |
| |
|
|||||| |
|
|
| T |
45083554 |
tataat |
45083549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 45079463 - 45079261
Alignment:
| Q |
13 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
112 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45079463 |
tttggtgctgttggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaactta |
45079364 |
T |
|
| Q |
113 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
45079363 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcaggtata |
45079264 |
T |
|
| Q |
213 |
tat |
215 |
Q |
| |
|
||| |
|
|
| T |
45079263 |
tat |
45079261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 298 - 524
Target Start/End: Complemental strand, 45083484 - 45083258
Alignment:
| Q |
298 |
atgaatcagaatggcctcaattccctgttttaccttcttatggaagtggaaggaatgcatctgatggaaggtttagcagtctcgtttttggaactaacct |
397 |
Q |
| |
|
||||||| || ||||||||| | |||| |||||| ||||||||||| ||||| | ||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45083484 |
atgaatccgattggcctcaacttcctgctttaccatcttatggaagaggaagagaaaagcctggtggaaggtttagcagtctcatttttggaactaacct |
45083385 |
T |
|
| Q |
398 |
cactgatgttataattactggtaactatttagataaattgatagctatgccattattaaaatttgtcaagcttatattaaaatttgatcaattgaatttt |
497 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||| ||| || |||||||||||||||||| |||||||||| |
|
|
| T |
45083384 |
cattgatgttattattactggtaactatttagataaagtaatagctaagccattattaaaatgtgttaatgttatattaaaatttgatctattgaatttt |
45083285 |
T |
|
| Q |
498 |
gttcataaggtaacaatgggacaattg |
524 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
45083284 |
ctacataaggtaacaatgggacaattg |
45083258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 295 - 426
Target Start/End: Complemental strand, 45079168 - 45079037
Alignment:
| Q |
295 |
aggatgaatcagaatggcctcaattccctgttttaccttcttatggaagtggaaggaatgcatctgatggaaggtttagcagtctcgtttttggaactaa |
394 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||| ||||||||||| ||||| ||||| ||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
45079168 |
aggatgaatcagaatggcctcaacttcttgttttaccatcttatggaaggggaagagatgcacctgctggaaggtttagtagtctcatttttggaactaa |
45079069 |
T |
|
| Q |
395 |
cctcactgatgttataattactggtaactatt |
426 |
Q |
| |
|
||||||||| || || ||||| ||||| |||| |
|
|
| T |
45079068 |
cctcactgacgtgattattaccggtaattatt |
45079037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 34506135 - 34505937
Alignment:
| Q |
13 |
tttggtgttgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaactta |
112 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||| || |||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34506135 |
tttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgcaataaccaaacttagccagtatgcaaatgatggtggtgcacaactta |
34506036 |
T |
|
| Q |
113 |
ttgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtat |
211 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
34506035 |
ttgttccaccaggtaaatggttaactggaagcttcaatctcacaagccatttcactctttttctccaaaaaggcgcggtcattcttggatctcaggtat |
34505937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 426
Target Start/End: Complemental strand, 34505886 - 34505733
Alignment:
| Q |
273 |
taaagggacttttatatgagtcaggatgaatcagaatggcctcaattccctgttttaccttcttatggaagtggaaggaatgcatctgatggaaggttta |
372 |
Q |
| |
|
||||||| | || |||||| |||||||||||| |||||||||| | ||| |||||| ||||||||||| ||||| ||||| ||| | |||||||| |
|
|
| T |
34505886 |
taaagggtcattgatatgatacaggatgaatcacaatggcctcagcttcctcctttaccatcttatggaaggggaagagatgcacctggtccaaggttta |
34505787 |
T |
|
| Q |
373 |
gcagtctcgtttttggaactaacctcactgatgttataattactggtaactatt |
426 |
Q |
| |
|
| |||||| |||| |||||| ||||||| || ||||||||||| ||||| |||| |
|
|
| T |
34505786 |
gtagtctcattttcggaactcacctcaccgacgttataattaccggtaattatt |
34505733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 41332905 - 41333000
Alignment:
| Q |
114 |
tgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggt |
209 |
Q |
| |
|
|||||||||||| | |||| | || || |||||||||||||| || ||||||||| | || || || ||||||||||||||||||| |||||||| |
|
|
| T |
41332905 |
tgttccaccaggaagatggttgactggtagcttcaatctcaccagtcatttcactttattcctacacaaagatgctgtcattcttggttctcaggt |
41333000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 41333176 - 41333221
Alignment:
| Q |
362 |
tggaaggtttagcagtctcgtttttggaactaacctcactgatgtt |
407 |
Q |
| |
|
|||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
41333176 |
tggaaggtatagcagtctaatttttggaaccaacctcactgatgtt |
41333221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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