View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_2D_low_15 (Length: 433)
Name: NF9960_2D_low_15
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Complemental strand, 50265983 - 50265563
Alignment:
| Q |
12 |
gatggacatcaaaaagcaactaagaccagagaaagcttctatatttagatgtattctgacctatgagggcctcaaaacgcaacaaagtgacatgccacat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50265983 |
gatggacatcaaaaagcaactaagaccagagaaagcttctatatttagatgtattctgacctatgagggcctcaaaacgcaacaaagtgacatgccacat |
50265884 |
T |
|
| Q |
112 |
ccatggccacaaactacatatcacttccaaagaatgttttgttaatgttgtcttataatactctgttcctgaaacgatgctaatgggagacagcctaatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50265883 |
ccatggccacaaactacatatcacttccaaagaatgttttgttaatgttgtcttataatactctgttcctgaaacgatgctaatgggagacagcctaatg |
50265784 |
T |
|
| Q |
212 |
ttagcccgtagtgtttgcactccactgacctcaattgtttctcaaaatgtcaacaatgtaatgctacaatgcttttaaggcttttcctcttttcctttnn |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50265783 |
ttagcccgtagtgtttgcactccactgacctcaattgtttctcaaaatgtcaacaatgtaatgctacaatgcttttaaggcttttcctcttttcctttaa |
50265684 |
T |
|
| Q |
312 |
nnnnncattttatttagaaatgatttttgtgtttacgacaattgtttttcctatccaaaaatacctaacggcgtagtttgtggcttgcttgccttttatt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50265683 |
aaaaacattttatttagaaatgatttttgtgtttaccacgattgtttttcctattcaaaaagatctaacggcgtagtttgtggcttgcttgccttttatt |
50265584 |
T |
|
| Q |
412 |
aatgtgtaattaatcattgat |
432 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
50265583 |
aatgtgtaattaatcattgat |
50265563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 429
Target Start/End: Original strand, 25375990 - 25376081
Alignment:
| Q |
338 |
ttgtgtttacgacaattgtttttcctatccaaaaatacctaacggcgtagtttgtggcttgcttgccttttattaatgtgtaattaatcatt |
429 |
Q |
| |
|
||||||||| || |||| |||| ||||||||||| ||||||| |||| |||| | ||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
25375990 |
ttgtgtttatgagaattagttttactatccaaaaaggcctaacgacgtaacttgttgtttgtttgccttctattcatgtgtaattaatcatt |
25376081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 45661639 - 45661545
Alignment:
| Q |
338 |
ttgtgtttacgacaattgtttttcctatccaaaaatacctaacggcgtagtttgtggcttgcttgccttttattaatgtgtaattaatcattgat |
432 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||| ||||||||| ||||||| || ||||||||| || | || ||||||||||| ||||| |
|
|
| T |
45661639 |
ttgtgtttacgaggattggttttactatccaaaaagacctaacggtacagtttgttgcacgcttgccttctactcatatgtaattaatcgttgat |
45661545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University