View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_2D_low_17 (Length: 405)
Name: NF9960_2D_low_17
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 1831485 - 1831845
Alignment:
| Q |
19 |
aaaaatttatcaaatgcaaagttgaatatggtttatgtgtgtgtgcgtgtgaagaataaaaaaggtaatgatatgatatttatatgtctatatgttaatg |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||| ||||| |||| |||||||||||||||| |
|
|
| T |
1831485 |
aaaaatttatcaaatgcaaagctgaatatggt--------gtgtgtgtgtaaagaataaaaaaggtaatgatctgatacttatctgtctatatgttaatg |
1831576 |
T |
|
| Q |
119 |
acttagtggtaactggaagcaacatagcatagatagaaaaatttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatt |
218 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
1831577 |
acttagtgttaactggaagcaacataacatagacagaaaaatt-caaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatt |
1831675 |
T |
|
| Q |
219 |
tccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaa |
318 |
Q |
| |
|
||| ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1831676 |
tccctggaatggaattcactaaaacttcagaatgtttagtgatgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaa |
1831775 |
T |
|
| Q |
319 |
tcctgcatctacaccatctgaagtg-accttaggtgtgtaaagaatgaagataaggagctagttgaccct |
387 |
Q |
| |
|
||||||||||||||||||||||||| | |||| | |||||||||||||||| | ||||||||||||||| |
|
|
| T |
1831776 |
tcctgcatctacaccatctgaagtgaatcttaagcttgtaaagaatgaagatgaagagctagttgaccct |
1831845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 333
Target Start/End: Complemental strand, 15490686 - 15490418
Alignment:
| Q |
66 |
tgtgaagaataaaaaaggtaatgatatgatatttatatgtctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaaatttcaa |
165 |
Q |
| |
|
|||||||||||| ||||||| || |||| |||| |||||||||||| |||| || ||||||||||||| ||| ||| ||| |||| || |||| |
|
|
| T |
15490686 |
tgtgaagaataacaaaggtagaaatctgatgcttatttgtctatatgttgatgatttcgtggtaactggaaccaatataattgagaaagaagaa-ttcat |
15490588 |
T |
|
| Q |
166 |
aagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcac |
265 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||| | |||||| | || |||||| | |||| |
|
|
| T |
15490587 |
aagacaaatgatgagagaatttgatatggctgatttgggaaagttaatatacttccttgaaatggaattcaattaaactttaaaaggtttagggatgcat |
15490488 |
T |
|
| Q |
266 |
cagaag--aaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacacc |
333 |
Q |
| |
|
|||||| ||| ||| || ||||| | |||||||||||||||||| | | ||||||| ||| |||||| |
|
|
| T |
15490487 |
cagaagataaacatgttattgatattcttaagagattcaacatgatgagttgcaatcctacatatacacc |
15490418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 275
Target Start/End: Complemental strand, 16944280 - 16944109
Alignment:
| Q |
105 |
tctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaa-atttcaaaagacaaatgatgagagaatttgagatggaagatttgg |
203 |
Q |
| |
|
|||||||||| || | |||||||||||| ||||||| |||| |||||| | || | ||||||||||||||||||| |||||| || ||| |||||| |
|
|
| T |
16944280 |
tctatatgttgataatttagtggtaactagaagcaatttagcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgg |
16944181 |
T |
|
| Q |
204 |
gaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaat |
275 |
Q |
| |
|
|||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| ||||||||||||||| |
|
|
| T |
16944180 |
gaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
16944109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 275
Target Start/End: Complemental strand, 17014945 - 17014774
Alignment:
| Q |
105 |
tctatatgttaatgacttagtggtaactggaagcaacatagcatagatagaaaa-atttcaaaagacaaatgatgagagaatttgagatggaagatttgg |
203 |
Q |
| |
|
|||||||||| || | |||||||||||| ||||||| |||| |||||| | || | ||||||||||||||||||| |||||| || ||| |||||| |
|
|
| T |
17014945 |
tctatatgttgataatttagtggtaactagaagcaatttagcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgg |
17014846 |
T |
|
| Q |
204 |
gaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaat |
275 |
Q |
| |
|
|||||||| ||| |||||||| || ||||||||| |||| ||| | | |||||| ||||||||||||||| |
|
|
| T |
17014845 |
gaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtgatgcaccagaagaaat |
17014774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 303
Target Start/End: Original strand, 9816931 - 9817073
Alignment:
| Q |
161 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtgg |
260 |
Q |
| |
|
||||||||||||||||||| ||| ||||| ||| | |||||||| ||||| ||||||| |||| || |||||||||||||| ||| | | |||||| |
|
|
| T |
9816931 |
ttcaaaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtga |
9817030 |
T |
|
| Q |
261 |
tgcaccagaagaaatatgctacaaatattttaaagagattcaa |
303 |
Q |
| |
|
||||| ||||||||||||| | | ||||||| ||||||||||| |
|
|
| T |
9817031 |
tgcactagaagaaatatgcaatagatattttgaagagattcaa |
9817073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 30065210 - 30065339
Alignment:
| Q |
203 |
ggaaagttaaaatatttccttgggatggaattcactaaaacttcataatgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattca |
302 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||||||||||||||| || || |||| ||| |||||||| |||||| | ||||| | ||||| |||| |
|
|
| T |
30065210 |
ggaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttca |
30065309 |
T |
|
| Q |
303 |
acatgatgggcttcaatcctgcatctacac |
332 |
Q |
| |
|
||||| || || ||||||||||||||||| |
|
|
| T |
30065310 |
acatgttgaactgcaatcctgcatctacac |
30065339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University