View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_2D_low_21 (Length: 389)
Name: NF9960_2D_low_21
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 44676750 - 44676881
Alignment:
| Q |
240 |
gggtgagaatgagtaaatagagaataatcatagcagtatattaccaaaaatgaataggaggaatttagcatttgggaagtcacaaatgagaggggaacaa |
339 |
Q |
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| T |
44676750 |
gggtgagaatgagtaaatagagaataatcatagcagtatattaccaaaaatgaataggaggaatttagcatttgggaagtcacaaatgagaggggaacaa |
44676849 |
T |
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| Q |
340 |
agacgagacaatgagaagac-ttagtgacaag |
370 |
Q |
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| T |
44676850 |
agacgagacaatgagaagactttagtgacaag |
44676881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 44676577 - 44676679
Alignment:
| Q |
65 |
gagaggtatactagcaaaaacacagatatgatgacaatagcattctttttctgtagacccgtatatatgctctcagattttagatacgggcccattaact |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44676577 |
gagaggtatactagcaaaaacacagatatgatgacaatagcattctttttctgtagacccgtatatatgctctcagattttagatacgggcccattaact |
44676676 |
T |
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| Q |
165 |
ttt |
167 |
Q |
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||| |
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| T |
44676677 |
ttt |
44676679 |
T |
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