View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_2D_low_23 (Length: 368)
Name: NF9960_2D_low_23
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_23 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 14115 - 13765
Alignment:
| Q |
18 |
caagcttggatatgaaagtaaggaacgagggactgtgtaaaggttttgtaagtacgtcggctgtttgcgcggcagaaggtatgggaaatagtcgcagcag |
117 |
Q |
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| T |
14115 |
caagcttggatatgaaagtaaggaacgagggactgtgtaaaggttttgtaagtacgtcggctgtttgcgcagcagaaggtatgggaaatagtcgcagcag |
14016 |
T |
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| Q |
118 |
gccattttgaatcttctctctaatgatgtgacaatctatttcaatgtgtttagtacgttcatggaaactggggttatgtgcgaggtagattgctgattta |
217 |
Q |
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| T |
14015 |
accattttgaatcttctctctaatgatgtgacaatctatttcaatgtgtttagtacgttcatggaaactggggttatgtgcgaggtagatggctgattta |
13916 |
T |
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| Q |
218 |
ttgtcgcagaaaacagaagcaggagaagagaaagagaggtgcagatctttaaagaggtacattagccattgcagttcacatgtaaggcttgctaatgcac |
317 |
Q |
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| T |
13915 |
ttgtcgcagaaaacagaagcaggagaagagaaagagaggtgcagatctttaaagaggtacattagccattgcagttcacatgtaaggcttgctaatgcgc |
13816 |
T |
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| Q |
318 |
gatattcagcttctgagcttgatttggagacgattgactgcttcttggatt |
368 |
Q |
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| T |
13815 |
gatattcagcttctgagcttgatttggagacgatcgactgcttcttggatt |
13765 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 43010780 - 43010867
Alignment:
| Q |
134 |
tctctaatgatgtgacaatctatttcaatgtgtttagtacgttcatggaaactggggttatgtgcgaggtagattgctgatttattgtc |
222 |
Q |
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| T |
43010780 |
tctctgatgatgtgacaatctatttcaacgtgtttaatacgttcatggtaa-tggtgttatgggcaaggtcgatgtctgattcattgtc |
43010867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 38825738 - 38825646
Alignment:
| Q |
122 |
ttttgaatcttctctctaatgatgtgacaatctatttcaatgtgtttagtacgttcatggaaactggggttatgtgcgaggtagattgctgat |
214 |
Q |
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| T |
38825738 |
ttttgaatcttttctctaattacatggcaatctatctcaatatgttttgtacgctcatgaaaagtagggttatgagcaagataaattgctgat |
38825646 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 46604668 - 46604576
Alignment:
| Q |
122 |
ttttgaatcttctctctaatgatgtgacaatctatttcaatgtgtttagtacgttcatggaaactggggttatgtgcgaggtagattgctgat |
214 |
Q |
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| T |
46604668 |
ttttgaatcttttctctaattacatggcaatctatctcaatatgttttgtacgctcatgaaaagtagggttatgagcaagataaattgctgat |
46604576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 17881586 - 17881678
Alignment:
| Q |
122 |
ttttgaatcttctctctaatgatgtgacaatctatttcaatgtgtttagtacgttcatggaaactggggttatgtgcgaggtagattgctgat |
214 |
Q |
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| T |
17881586 |
ttttgaatcttttctctaattacatggcaatctatctcaatatgttttgtacgctcatgaaaagtagggttatgagcaagataaattgctgat |
17881678 |
T |
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