View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_2D_low_26 (Length: 350)
Name: NF9960_2D_low_26
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 50264879 - 50264584
Alignment:
| Q |
7 |
aatgatatataaaaaggtgtctatgatactcaatgtgagtttgtatcctacaagaaaaatttgtgattaatttacaatacattttccacttagatgaatg |
106 |
Q |
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| T |
50264879 |
aatgatatataaaaaggtgtctatgatactcaatgtgagtttgtatcctacaagaaaaatttgtgattaatttacaatacattttccacttagatgaatg |
50264780 |
T |
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| Q |
107 |
tgaactctcaataaattggaggcacatttgagaattataatgacccaccatcacatgtgaattcacgttgatatgatacatttacaacattctactttgg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50264779 |
tgaactctcaataaattggaggcacatttgagaattataatgacccaccatcacatgtgaattcacgtt-----gatacatttacaacattctactttgg |
50264685 |
T |
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| Q |
207 |
taggtaaagattcattgatcacttttgcccccactccttgttttgtgtatat-aaagcaaacaataaatgtaatgccaacaaagtacaaacccaatcacc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50264684 |
taggtaaagattcattgatcacttttgcccccactccttgttttgtgtatataaaagcaaacaataaatgtaatgcctacaaagtacaaacccaatcacc |
50264585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 50267714 - 50267748
Alignment:
| Q |
296 |
cccaatcacccaccagcaacatcaacttcaccact |
330 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
50267714 |
cccactcacccaccagcaacatcaacttcaccact |
50267748 |
T |
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