View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_2D_low_29 (Length: 350)
Name: NF9960_2D_low_29
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 332
Target Start/End: Original strand, 37119577 - 37119888
Alignment:
| Q |
21 |
gcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119577 |
gcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaag |
37119676 |
T |
|
| Q |
121 |
gagcatcagtatcaagttctttgtaattctgcataagacaaagtgttgctgctagtaagcaatatattgctgttgtaatcgtcattgatccaactagacc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119677 |
gagcatcagtatcaagttctttgtaattctgcataagacaaagtgttgctcctagtaagcaatatattgctgttgtaatcgtcattgatccaactagacc |
37119776 |
T |
|
| Q |
221 |
gataggaatgtctctaccagggtttttagtttcttcagccatggttgaaactgcatcaaagccaatataagcaaagaaaagaacagccgaagaactgacc |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119777 |
gataggaatgtctctaccagggtttttagtttcttcagccatggttgaaacagcatcaaagccaatataagcaaagaaaagaacagccgaagaactgacc |
37119876 |
T |
|
| Q |
321 |
attccatgcaac |
332 |
Q |
| |
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|||||||||||| |
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| T |
37119877 |
attccatgcaac |
37119888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 37111320 - 37111623
Alignment:
| Q |
19 |
cagcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaa |
118 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37111320 |
cagcaccaaccaacaaaaccgttgtcattccttttaaagcgcctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaacagagaa |
37111419 |
T |
|
| Q |
119 |
aggagcatcagtatcaagttctttgtaattctgcataagacaaagtgttgctgctagtaagcaatatattgctgttgtaatcgtcattgatccaactaga |
218 |
Q |
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|||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||| |
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| T |
37111420 |
aggagcatcaacatttagttctttgtaattctgcataagacacagtgttgctgccagtaagcaataaattattgttgtaatcgtcattgaaccaactaga |
37111519 |
T |
|
| Q |
219 |
ccgataggaatgtctctaccagggtttttagtttcttcagccatggttgaaactgcatcaaagccaatataagcaaagaaaagaacagccgaagaactga |
318 |
Q |
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|| || |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |||| | ||| |
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| T |
37111520 |
ccaattggaatgtctctaccagggttcttggtttcttcagccatggttgaaacagcatcaaagccaacataagcaaagaaaagtacagcggaagcattga |
37111619 |
T |
|
| Q |
319 |
ccat |
322 |
Q |
| |
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|||| |
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| T |
37111620 |
ccat |
37111623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 37136672 - 37136387
Alignment:
| Q |
25 |
taaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagc |
124 |
Q |
| |
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||||||||||||| || |||||||| ||||| || || |||| ||||||||| |||||||| || |||||||| |||||| ||||| || || || || |
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| T |
37136672 |
taaccaacaaaacagtcgtcattcccttcaatgctcccaatgcaacaatgtatttagcccatccccatccaacagaactaaatgcaaccgaaaatggtgc |
37136573 |
T |
|
| Q |
125 |
atcagtatcaagttctttgtaattctgcataagacaaagtgttgctgctagtaagcaatatattgctgttgtaatcgtcattgatccaactagaccgata |
224 |
Q |
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| T |
37136572 |
attgacatcaattgttttgtagttctgcataaggcatagtgttgttgctagtgagcaatatatgaaagtgataattaccattgatcctacaagaccaata |
37136473 |
T |
|
| Q |
225 |
ggaatgtctctaccagggtttttagtttcttcagccatggttgaaactgcatcaaagccaatataagcaaagaaaagaacagccga |
310 |
Q |
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||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |
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| T |
37136472 |
ggaatgtctctgccagggtttttagtttcctcggccatagttgacactgcatcaaagcctatgtaagcaaagaaaagaacagccga |
37136387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 21597314 - 21597378
Alignment:
| Q |
203 |
cattgatccaactagaccgataggaatgtctctaccagggtttttagtttcttcagccatggttg |
267 |
Q |
| |
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|||||| |||| || ||| ||||| || |||||| |||||||||||||||||||||||| |||| |
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| T |
21597314 |
cattgaaccaattaaaccaataggtatatctctagaagggtttttagtttcttcagccatagttg |
21597378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 10681162 - 10681104
Alignment:
| Q |
42 |
gtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagc |
100 |
Q |
| |
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|||||||||||||| ||||| |||| |||||| ||||||||||| | |||||||||||| |
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| T |
10681162 |
gtcattcctttcaatgcaccaaatgcaacaatatacttagcccatttcattccaacagc |
10681104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 10681013 - 10680912
Alignment:
| Q |
191 |
tgttgtaatcgtcattgatccaactagaccgataggaatgtctctaccagggtttttagtttcttcagccatggttgaaactgcatcaaagccaatataa |
290 |
Q |
| |
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|||||||| ||||||||||| | |||||| ||||| || ||| | ||||| || || ||||| |||||||| || ||||||||||| || |||| |||| |
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| T |
10681013 |
tgttgtaagtgtcattgatcctattagaccaatagggatatcttttccaggattcttcgtttcctcagccattgtcgaaactgcatcgaatccaacataa |
10680914 |
T |
|
| Q |
291 |
gc |
292 |
Q |
| |
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|| |
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| T |
10680913 |
gc |
10680912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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