View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_2D_low_32 (Length: 244)

Name: NF9960_2D_low_32
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_2D_low_32
NF9960_2D_low_32
[»] chr1 (5 HSPs)
chr1 (19-106)||(30671519-30671606)
chr1 (183-244)||(30671381-30671442)
chr1 (19-70)||(30710210-30710261)
chr1 (19-71)||(30656393-30656445)
chr1 (19-71)||(30689452-30689504)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 30671606 - 30671519
Alignment:
Q  19 agttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagcaccagctacttctgagaaaacttgttaatttcagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30671606 agttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagcaccagctacttctgagaaaacttgttaatttcagta 30671519  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 30671442 - 30671381
Alignment:
Q  183 cattctcttcttattacttttcagaagaaacaaaatttattcatattttgagttcaaagagt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30671442 cattctcttcttattacttttcagaagaaacaaaatttattcatattttgagttcaaagagt 30671381  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 30710261 - 30710210
Alignment:
Q  19 agttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagc 70  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||||||||    
T  30710261 agttgaatatcttgagcaacttctaagtatgtcagataatcaaagtacaagc 30710210  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 30656445 - 30656393
Alignment:
Q  19 agttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagca 71  Q
    |||||||||||||||||||||| |||| || || ||| |||||| ||||||||    
T  30656445 agttgaatatcttgagcaacttctaaccatatctgataatcaaactacaagca 30656393  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 30689504 - 30689452
Alignment:
Q  19 agttgaatatcttgagcaacttttaactatgtcagatcatcaaagtacaagca 71  Q
    |||||||||||||||||||||| || | || || ||| |||||||||||||||    
T  30689504 agttgaatatcttgagcaacttctatccatatctgataatcaaagtacaagca 30689452  T

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