View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_2D_low_35 (Length: 226)
Name: NF9960_2D_low_35
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_2D_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 40528718 - 40528518
Alignment:
| Q |
13 |
tttggtgttgatcatgatgctactttgatgcattccatctctgagatttctggaggcacattttcctttattgaagctgaggaagtgattcaggatgcgt |
112 |
Q |
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| T |
40528718 |
tttggtgttgatcatgatgctactttgatgcattccatctctgagatttctggaggcacattttcctttattgaagctgaggaagtgattcaggatgcgt |
40528619 |
T |
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| Q |
113 |
tcgctcagtgtattgggggattattgagtgtggttgttcaagatctacatgtggaagttcggtgtgctcagtctcgtttgcaacttagttcagtaaaagc |
212 |
Q |
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| T |
40528618 |
tcgctcagtgtattgggggattattgagtgtggttgttcaagatctacatgtggaagttcggtgtgctcagtctcgtttgcaacttagttcagtaaaagc |
40528519 |
T |
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| Q |
213 |
a |
213 |
Q |
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| T |
40528518 |
a |
40528518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 21594415 - 21594530
Alignment:
| Q |
28 |
gatgctactttgatgcattccatctctgagatttctggaggcacattttcctttattgaagctgaggaagtgattcaggatgcgttcgctcagtgtattg |
127 |
Q |
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| T |
21594415 |
gatgctacttcaatgcattcaatctccgagatatcaggaggtacattttcttttatcgaagctgaggacgtaattcaggacgcatttgcgcagtgtattg |
21594514 |
T |
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| Q |
128 |
ggggattattgagtgt |
143 |
Q |
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| T |
21594515 |
ggggactcttgagtgt |
21594530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 35365732 - 35365805
Alignment:
| Q |
137 |
tgagtgtggttgttcaagatctacatgtggaagttcggtgtgctcagtctcgtttgcaacttagttcagtaaaa |
210 |
Q |
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| T |
35365732 |
tgagtgtggtggttcaagatctgcatatagaagtttggtgtgctcggtctcgtttgcaacatagttcggtaaaa |
35365805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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