View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_high_1 (Length: 581)
Name: NF9960_high_1
Description: NF9960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_high_1 |
 | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 20)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Original strand, 30135205 - 30135757
Alignment:
| Q |
17 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30135205 |
atttgtgagaatgtctaaataagcccaacccccaataacatactaaaagtggtccagtgtagaggtaatccagtccaaaggaaccaattaataagaatag |
30135304 |
T |
|
| Q |
117 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
30135305 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagagtaaactttcttattcaacccttcttgatcaaatctctgtaattcattt |
30135404 |
T |
|
| Q |
217 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30135405 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcg |
30135504 |
T |
|
| Q |
317 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30135505 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
30135604 |
T |
|
| Q |
417 |
tttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtc |
516 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30135605 |
ttgagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatcctttgtgatcattaccaaaaggaacccctagttctgtc |
30135704 |
T |
|
| Q |
517 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30135705 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
30135757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Original strand, 30039011 - 30039563
Alignment:
| Q |
17 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
30039011 |
atttgtgagaatgtctaaataagcccaacccccaataacatactaaaattggtccagtgtagcggtaatccagtccaaaggaaccaattaataagaatag |
30039110 |
T |
|
| Q |
117 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30039111 |
caacttcagttcttcactctctaaacaattaaaactcaattccagagtagagtaaactttcttatgcaacccttcttgatcaaatctctgtaattcattt |
30039210 |
T |
|
| Q |
217 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30039211 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcg |
30039310 |
T |
|
| Q |
317 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30039311 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
30039410 |
T |
|
| Q |
417 |
tttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtc |
516 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30039411 |
ttgagtgcgcatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatcctttgtgatcattaccaaaaggaacccctagttctgtc |
30039510 |
T |
|
| Q |
517 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30039511 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
30039563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Complemental strand, 30080090 - 30079538
Alignment:
| Q |
17 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatag |
116 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30080090 |
atttgtgagaaagtgtaaataagcccaacccccaataacatacaaaaagtggtccagtgtagaggtaatccagtccaaaggaaccaattaataagaatag |
30079991 |
T |
|
| Q |
117 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30079990 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagagtaaactttcttatgcaacccttcttgatcaaatctctgtaattcattt |
30079891 |
T |
|
| Q |
217 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30079890 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcg |
30079791 |
T |
|
| Q |
317 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30079790 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
30079691 |
T |
|
| Q |
417 |
tttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtc |
516 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30079690 |
ttgagtgcgcatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatcctttgtgatcattaccaaaaggaacccctagttctgtc |
30079591 |
T |
|
| Q |
517 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30079590 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
30079538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Original strand, 30108489 - 30109041
Alignment:
| Q |
17 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
30108489 |
atttgtgagaatgtctaaataagcccaacccccaataacatactaaaattggtccagtgtagcggtaatccagtccaaaggaaccaattaataagaatag |
30108588 |
T |
|
| Q |
117 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30108589 |
caacttcagttcttcactctctaaacaattaaaactcaattccagagtagagtaaactttcttatgcaacccttcttgatcaaatctctgtaattcattt |
30108688 |
T |
|
| Q |
217 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30108689 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcg |
30108788 |
T |
|
| Q |
317 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30108789 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
30108888 |
T |
|
| Q |
417 |
tttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtc |
516 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30108889 |
ttgagtgcgcatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatcctttgtgatcattaccaaaaggaacccctagttctgtc |
30108988 |
T |
|
| Q |
517 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30108989 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
30109041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Original strand, 30233149 - 30233701
Alignment:
| Q |
17 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
30233149 |
atttgtgagaatgtctaaataagcccaacccccaataacatactaaaattggtccagtgtagcggtaatccagtccaaaggaaccaattaataagaatag |
30233248 |
T |
|
| Q |
117 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30233249 |
caacttcagttcttcactctctaaacaattaaaactcaattccagagtagagtaaactttcttatgcaacccttcttgatcaaatctctgtaattcattt |
30233348 |
T |
|
| Q |
217 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30233349 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcg |
30233448 |
T |
|
| Q |
317 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30233449 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
30233548 |
T |
|
| Q |
417 |
tttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtc |
516 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
30233549 |
ttgagtgcgcatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatcctttgtgatcattaccaaaaggaaccccaagttctgtc |
30233648 |
T |
|
| Q |
517 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30233649 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
30233701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Complemental strand, 30021684 - 30021132
Alignment:
| Q |
17 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30021684 |
atttgtgagaatgtctaaataagcccaacccccaataacatactaaaagtggtccagtgtagaggtaatccagtccaaaggaaccaattaataagaatag |
30021585 |
T |
|
| Q |
117 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30021584 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagagtaaactttcttatgcaacccttcttgatcaaatctctgtaattcattt |
30021485 |
T |
|
| Q |
217 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30021484 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcg |
30021385 |
T |
|
| Q |
317 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30021384 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttt |
30021285 |
T |
|
| Q |
417 |
tttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtc |
516 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
30021284 |
ttgagtgcccatctcacaaatcaagacattaagatctctagatgtcaccaccaatttgcatcctttgtgatcattaccgaaaggaacccccagttctgtc |
30021185 |
T |
|
| Q |
517 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30021184 |
aaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
30021132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 30120507 - 30120875
Alignment:
| Q |
17 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30120507 |
atttgtgagaatgtctaaataagcccaacccccaataacatactaaaagtggtccagtgtagaggtaatccagtccaaaggaaccaattaataagaatag |
30120606 |
T |
|
| Q |
117 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30120607 |
caacttcagttcttcactctctaaacaattataactcaattccagagtagagtaaactttcttatgcaacccttcttgatcaaatctctgtaattcattt |
30120706 |
T |
|
| Q |
217 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30120707 |
aaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcg |
30120806 |
T |
|
| Q |
317 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcct |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30120807 |
caattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcct |
30120875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 97 - 569
Target Start/End: Complemental strand, 30278134 - 30277662
Alignment:
| Q |
97 |
gaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgat |
196 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |
|
|
| T |
30278134 |
gaaccaatgaataagaatagcaattttagttcctcattctctaaacaattataactcaattcaagagtagagtaaactttcttatgcaacccttcttcat |
30278035 |
T |
|
| Q |
197 |
cagatctctgtaattcatttaaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcaca |
296 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||| |
|
|
| T |
30278034 |
caaatctctctaattcatttaaggcatccttccaagcagagacatgttttttcctcaaagcctttgccactgtaactatcaaaaggggcaaaccagaaca |
30277935 |
T |
|
| Q |
297 |
acattttgcaacccgtatcgcaattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaa |
396 |
Q |
| |
|
|||||| || || | |||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||| |||| |
|
|
| T |
30277934 |
acatttggccactttttctgcaattggctttatattgaattcttgaacaacatcacctgccattttctcaaataatttccaactatcatcctcaaataaa |
30277835 |
T |
|
| Q |
397 |
acttcaagtctaaattcttttttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaa |
496 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
30277834 |
acttcaagtctaaattctttttgagtgccaatctcacggttcaagacattaagatctctggatgaaaccaccaacttgcatcctttgtgatcattaccaa |
30277735 |
T |
|
| Q |
497 |
aaggaacccctagttctgtcaaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30277734 |
aaggaacccccagatctgccaaatcaagtctcccccaaatgtcatccagaataacaagaatactcttctcctt |
30277662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 28 - 569
Target Start/End: Complemental strand, 30250603 - 30250062
Alignment:
| Q |
28 |
tgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatagcaacttcagtt |
127 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||| || | |||| |||||| | ||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
30250603 |
tgtctaaataagcccaaccccaaataatataaaaacatcgatccaatgtagatgtaatctagtccaaaggaaccaatgaacaagaatagcaacttcagtt |
30250504 |
T |
|
| Q |
128 |
cttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcatttaaggcatcctt |
227 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
30250503 |
cctcactctctaaacaattataactcaattccagagtagagtaaactttcttatgcaatccttcttgatcaaatctttctaattcatttaaggcatcctt |
30250404 |
T |
|
| Q |
228 |
ccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcgcaattggtttt |
327 |
Q |
| |
|
|||| |||||| | ||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||| || || ||||| || ||| |
|
|
| T |
30250403 |
ccaagcagagacattctttctcctcaaagcctttgctactgtaactatcaaaaggggtaaaccagcacaacattttgccacttttactgcaatgggcttt |
30250304 |
T |
|
| Q |
328 |
atattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttttttagtgccca |
427 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
30250303 |
atattgaattcttgaacaacatcacctgtcattttcacaaacaatttccaactatcgtcctcatgtaaaacttcaagtctaaattctttctgagtgccca |
30250204 |
T |
|
| Q |
428 |
tctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtcaaatcaagtct |
527 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||| ||| | |||| |||||||||||| |
|
|
| T |
30250203 |
tctcacagcttaacacattaagatctctggatgtcaccaccaacttgcatcctttgtggtcatcaccaaaaggaatccccacttcttccaaatcaagtct |
30250104 |
T |
|
| Q |
528 |
cccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||||| || |||||||||||||| | |||| ||||||||| |
|
|
| T |
30250103 |
gccccatatatcatccaaaataacgataatattcttctcctt |
30250062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 97 - 569
Target Start/End: Complemental strand, 30169809 - 30169337
Alignment:
| Q |
97 |
gaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgat |
196 |
Q |
| |
|
|||||||| ||||| || || ||||||| || ||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
30169809 |
gaaccaatgaataaaaagagtgacttcaggtcatcactttctaaacaattataactcaattccaaggtagagtaaactttcttatgcaagccttcttgat |
30169710 |
T |
|
| Q |
197 |
cagatctctgtaattcatttaaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcaca |
296 |
Q |
| |
|
|| |||||| ||||| ||||||||||||||||||| |||| | |||||| ||||||||||| ||| || ||||||||||||||||| |||||||| |
|
|
| T |
30169709 |
caaatctctctaattgatttaaggcatccttccaagaagaggaatctttttttctcaaagccttcgccactgtaactatcaaaaggggcaacccagcaca |
30169610 |
T |
|
| Q |
297 |
acattttgcaacccgtatcgcaattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaa |
396 |
Q |
| |
|
||| |||| || || |||||||| |||||||| ||||| ||||||| |||||||||||| ||||||||||||||||| |||||||| | ||||| |
|
|
| T |
30169609 |
acaccttgccacttctactgcaattggctttatatttaattcatgaacaatatcacctgccattttctcaaacaatttccaactatcctcttgttgtaaa |
30169510 |
T |
|
| Q |
397 |
acttcaagtctaaattcttttttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaa |
496 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||| |
|
|
| T |
30169509 |
acttcaagtctaaattctttttgaatgcccatctcacagtttaacacattaagatctctggatgtcaccaccaacttgcatcctttgtaatcatcaccaa |
30169410 |
T |
|
| Q |
497 |
aaggaacccctagttctgtcaaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
|||||| ||| | |||||||||||||| ||||||||| |||||||| | ||||||||||||| ||||||||| |
|
|
| T |
30169409 |
aaggaatccccacttctgtcaaatcaattctcccccagatgtcatcaagaataacaagaatattcttctcctt |
30169337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 30 - 569
Target Start/End: Complemental strand, 30788945 - 30788406
Alignment:
| Q |
30 |
tctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatagcaacttcagttct |
129 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||| | | | |||||| |||| ||| || ||||| |||||||| |||||||| || |||| ||||| |
|
|
| T |
30788945 |
tctatataagcccgacccccaataacataaaaatagttctgcagtgtggaggtgatctaggccaaatgaaccaatgaataagaacagtgactttagttca |
30788846 |
T |
|
| Q |
130 |
tcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcatttaaggcatccttcc |
229 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | || ||| || | |||||||||||||||||||| |||| |||| | ||| |||||||| | |||| |
|
|
| T |
30788845 |
tcactttctaagcaattataactcaattctaaagcagagtagattttcttatgcaacccttctttatcaaatctatttaactcatttaatgtgcttttcc |
30788746 |
T |
|
| Q |
230 |
aattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcgcaattggttttat |
329 |
Q |
| |
|
||| | ||| || ||||||||||||||| |||||| | || |||| ||||||||||||||||||||| | || || || ||||||||||| || |
|
|
| T |
30788745 |
aatcatagaatttttttttcctcaaagcttttgccactgcaacaatcagaaggggcaaaccagcacaacaaatggccacttctactgcaattggtttaat |
30788646 |
T |
|
| Q |
330 |
attgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttttttagtgcccatc |
429 |
Q |
| |
|
||| || || |||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
30788645 |
attaaaatcttgaacaacatcacctgccattttctcaaataatttccaactatcttcctcaagtaaaacttcaagtctaaattctttttgagtgccaatc |
30788546 |
T |
|
| Q |
430 |
tcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtcaaatcaagtctcc |
529 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||| |||||||||| || |||| ||||||||||| ||| | |||| |||||||||||| | |
|
|
| T |
30788545 |
tcacggttcaacacattaaggtctctagatgtcaccaccaacttgcatcctttgtggtcatcaccaaaaggaatccccacttcttccaaatcaagtctac |
30788446 |
T |
|
| Q |
530 |
cccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
|||| || |||||||||| || |||||| ||||||||| |
|
|
| T |
30788445 |
cccatatatcatccaaaacaatgagaatattcttctcctt |
30788406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 85 - 569
Target Start/End: Complemental strand, 30090904 - 30090419
Alignment:
| Q |
85 |
tccagtccaaaggaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgca |
184 |
Q |
| |
|
|||| |||||| |||||||| || | ||| || ||||||| || || || ||||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
30090904 |
tccaatccaaatgaaccaatgaaaaggaagagtgacttcaggtcatccctttctaaacaattataactcaattccaaggtagagtagactttcttatgca |
30090805 |
T |
|
| Q |
185 |
acccttcttgatcagatctctgtaattcatttaaggcatccttccaattagagactt-gttttttcctcaaagcctttgccgtagtgactatcaaaaggg |
283 |
Q |
| |
|
| |||| ||||||| |||||| |||| |||||||||||||||||| ||| ||| |||||| ||||||||||| ||| ||| ||||||||||| | |
|
|
| T |
30090804 |
aaccttgttgatcaaatctctccaattggtttaaggcatccttccaagcggaggcttcttttttttctcaaagccttcgccacagtaactatcaaaagag |
30090705 |
T |
|
| Q |
284 |
gcaaaccagcacaacattttgcaacccgtatcgcaattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatc |
383 |
Q |
| |
|
| || | ||||||||| | || || || ||||||||| |||||||| ||||| ||||||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
30090704 |
gtaactcggcacaacatctggccacttctaccgcaattggctttatattaaattcatgaacaatatcacctgccattttctcaaacaatttccaactatc |
30090605 |
T |
|
| Q |
384 |
ctcctcaagtaaaacttcaagtctaaattcttttttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttca |
483 |
Q |
| |
|
||||| | | ||||| |||| ||||||| |||| | | || ||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30090604 |
ctcctgatgcaaaacatcaattctaaatgctttctgaatgttcatctcacagtttaacacattaagatctctggatgtcaccaccaacttgcatcctttg |
30090505 |
T |
|
| Q |
484 |
tgatcattaccaaaaggaacccctagttctgtcaaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
|| |||| ||||||||||| ||| | |||| |||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30090504 |
tggtcatcaccaaaaggaatccccacttctaccaaatcaagtctaccccaaatgtcatccagaataacaagaatactcttctcctt |
30090419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 85 - 569
Target Start/End: Complemental strand, 30127509 - 30127024
Alignment:
| Q |
85 |
tccagtccaaaggaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgca |
184 |
Q |
| |
|
|||| |||||| |||||||| || | ||| || ||||||| || || || ||||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
30127509 |
tccaatccaaatgaaccaatgaaaaggaagagtgacttcaggtcatccctttctaaacaattataactcaattccaaggtagagtagactttcttatgca |
30127410 |
T |
|
| Q |
185 |
acccttcttgatcagatctctgtaattcatttaaggcatccttccaattagagactt-gttttttcctcaaagcctttgccgtagtgactatcaaaaggg |
283 |
Q |
| |
|
| |||| ||||||| |||||| |||| |||||||||||||||||| ||| ||| |||||| ||||||||||| ||| ||| ||||||||||| | |
|
|
| T |
30127409 |
aaccttgttgatcaaatctctccaattggtttaaggcatccttccaagcggaggcttcttttttttctcaaagccttcgccacagtaactatcaaaagag |
30127310 |
T |
|
| Q |
284 |
gcaaaccagcacaacattttgcaacccgtatcgcaattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatc |
383 |
Q |
| |
|
| || | ||||||||| | || || || ||||||||| |||||||| ||||| ||||||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
30127309 |
gtaactcggcacaacatctggccacttctaccgcaattggctttatattaaattcatgaacaatatcacctgccattttctcaaacaatttccaactatc |
30127210 |
T |
|
| Q |
384 |
ctcctcaagtaaaacttcaagtctaaattcttttttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttca |
483 |
Q |
| |
|
||||| | | ||||| |||| ||||||| |||| | | || ||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30127209 |
ctcctgatgcaaaacatcaattctaaatgctttctgaatgttcatctcacagtttaacacattaagatctctggatgtcaccaccaacttgcatcctttg |
30127110 |
T |
|
| Q |
484 |
tgatcattaccaaaaggaacccctagttctgtcaaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
|| |||| ||||||||||| ||| | |||| |||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30127109 |
tggtcatcaccaaaaggaatccccacttctaccaaatcaagtctaccccaaatgtcatccagaataacaagaatactcttctcctt |
30127024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 85 - 567
Target Start/End: Complemental strand, 30222361 - 30221879
Alignment:
| Q |
85 |
tccagtccaaaggaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgca |
184 |
Q |
| |
|
||||||||||| ||||||||||| | ||| || ||||||| || || || ||||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
30222361 |
tccagtccaaatgaaccaattaaaaggaagagtgacttcaggtcatccctttctaaacaattataactcaattccaaggtagagtagactttcttatgca |
30222262 |
T |
|
| Q |
185 |
acccttcttgatcagatctctgtaattcatttaaggcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaagggg |
284 |
Q |
| |
|
| |||| ||||||| |||||| |||| |||||||||| ||||||| ||| ||| |||||| ||||||||||| ||| ||| ||||||||||| || |
|
|
| T |
30222261 |
aaccttgttgatcaaatctctccaattggtttaaggcattcttccaagcggaggcttctttttttctcaaagccttcgccacagtaactatcaaaagagg |
30222162 |
T |
|
| Q |
285 |
caaaccagcacaacattttgcaacccgtatcgcaattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcc |
384 |
Q |
| |
|
|| || ||||||||| | || || || ||||||||| |||||||| ||||| ||||||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
30222161 |
taacccggcacaacatctggccacttctaccgcaattggctttatattaaattcatgaacaatatcacctgccattttctcaaacaatttccaactatcc |
30222062 |
T |
|
| Q |
385 |
tcctcaagtaaaacttcaagtctaaattcttttttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcat |
484 |
Q |
| |
|
|||| | | ||||| ||||||||||| |||| | | || ||||||||| | |||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
30222061 |
tcctgatgcaaaacatcaagtctaaaagctttctgaatgttcatctcacagtttaacacattaagatctctggatgtcaccaccaacttgcatcctttgt |
30221962 |
T |
|
| Q |
485 |
gatcattaccaaaaggaacccctagttctgtcaaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcc |
567 |
Q |
| |
|
| |||| |||||||||| ||| | |||| |||||||||||| ||||| || ||||| | |||||||||||||| ||||||| |
|
|
| T |
30221961 |
ggtcatccccaaaaggaatccccacttctaccaaatcaagtctaccccagatatcatcaagaataacaagaatactcttctcc |
30221879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 569
Target Start/End: Complemental strand, 30066897 - 30066350
Alignment:
| Q |
20 |
tgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatagcaa |
119 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||| | | ||| | | ||| |||| |||| ||| |||||||| ||||| || |||||||| || | |
|
|
| T |
30066897 |
tgtgagagtgtctatataagcccatcccccaatagcttgaaaacagttctccggtgtggaggtaatctagtccaaacgaacctatgaataagaacagtga |
30066798 |
T |
|
| Q |
120 |
cttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcatttaag |
219 |
Q |
| |
|
||| || || ||||| |||| ||||||||||||||||||| || |||||| | ||||||||||| ||||||||||||| |||||| ||| |||||||| |
|
|
| T |
30066797 |
ctttagctcatcactttctaggcaattataactcaattccaaagcagaatatattttcttatgcagcccttcttgatcaaatctctctaactcatttaac |
30066698 |
T |
|
| Q |
220 |
gcatccttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcgcaa |
319 |
Q |
| |
|
| ||||||| | ||| || ||| |||||||||||||||||| ||| || |||||||| || ||||||||||||| | | || || || |||| |
|
|
| T |
30066697 |
gtgcttttccaatcaaagatttttttcttcctcaaagcctttgccacagtaacaatcaaaagcggaaaaccagcacaacgtctggccacttctactgcaa |
30066598 |
T |
|
| Q |
320 |
ttggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttt |
419 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| |||| |||||||| ||| |||||||||||| ||||||||||||||||||||| | | |
|
|
| T |
30066597 |
ttggttttatattgaaatcttgaacaacatcacctgccattttcttaaacaattgccaactatcctcctcatttaaaacttcaagtctaaattc--tctg |
30066500 |
T |
|
| Q |
420 |
agtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtcaaa |
519 |
Q |
| |
|
||| || | |||||| |||||| ||| |||||||| ||||||||||||| || ||||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
30066499 |
agtaccaaactcacagctcaacaaatttagatctctagatgtcaccaccaccttacatcctttatgatcattaccaaatggaacccccagttctgtcaat |
30066400 |
T |
|
| Q |
520 |
tcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
|||| | ||| |||||||||||| | | ||||||||||| ||||||||| |
|
|
| T |
30066399 |
tcaattttcctccaaatgtcatctagcacaacaagaatactcttctcctt |
30066350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 69 - 570
Target Start/End: Original strand, 30186118 - 30186625
Alignment:
| Q |
69 |
tccagtgtagaggacatccagtccaaaggaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaa |
168 |
Q |
| |
|
|||||||| |||| ||| | |||||| |||||||| |||||||| | |||||||||| ||||| |||| ||||||||||||| |||| ||||||| |
|
|
| T |
30186118 |
tccagtgtggaggtgatctactccaaacgaaccaatgaataagaacaatgacttcagttcatcactttctaggaaattataactcaactccaaagtagaa |
30186217 |
T |
|
| Q |
169 |
taaactttctt------atgcaacccttcttgatcagatctctgtaattcatttaaggcatccttccaattagagacttgttttttcctcaaagcctttg |
262 |
Q |
| |
|
| | | |||| ||||| ||||||||||||| |||||| ||| |||||||| | | | ||||| | ||| | |||||||||||||||||| | |
|
|
| T |
30186218 |
ttgattctcttgtcgttatgcagcccttcttgatcaaatctctctaaatcatttaatgtgttttgccaatcaaagatcttttttttcctcaaagccttag |
30186317 |
T |
|
| Q |
263 |
ccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcgcaattggttttatattgaattcgtgaacaacatcacctgccatctt |
362 |
Q |
| |
|
| ||| || ||||||||||||||||| ||||||| ||| || ||| | |||||||| |||||||||||||| |||||||||||||||||||| || |
|
|
| T |
30186318 |
caacagtaacaatcaaaaggggcaaacctgcacaacgtttggccacctccactgcaattggctttatattgaattcttgaacaacatcacctgccatttt |
30186417 |
T |
|
| Q |
363 |
ctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttttttagtgcccatctcacaaatcaacacattaagatctctggatgtc |
462 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||| |||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
30186418 |
ctcaaacaatttccaactatcctcctcatgcaaagcttcaagtctgaattctttctgagtgcccatctcacagctcaacacattaagatctctagatgtc |
30186517 |
T |
|
| Q |
463 |
accaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtcaaatcaagtctcccccaaatgtcatccaaaataacaagaatacgct |
562 |
Q |
| |
|
||||| || |||||||||| || || | |||||||||| ||| | |||| |||||||||||| ||||| |||||||||| |||||||||||||| || |
|
|
| T |
30186518 |
accactaacttgcatcctttgtggtcgtcgccaaaaggaatccccacttctaccaaatcaagtctaccccagatgtcatccagaataacaagaatactct |
30186617 |
T |
|
| Q |
563 |
tctccttt |
570 |
Q |
| |
|
||| |||| |
|
|
| T |
30186618 |
tcttcttt |
30186625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 142 - 569
Target Start/End: Complemental strand, 30010280 - 30009853
Alignment:
| Q |
142 |
caattataactcaattccagagtagaataaactttcttatgcaacccttcttgatcagatctctgtaattcatttaaggcatccttccaattagagactt |
241 |
Q |
| |
|
||||||||||||||||||| || |||||| | ||||||||||| ||||||||||||| |||||| ||| |||||||| | ||||||| | ||| || |
|
|
| T |
30010280 |
caattataactcaattccaaagcagaatatattttcttatgcagcccttcttgatcaaatctctctaactcatttaatgtgcttttccaatcaaagattt |
30010181 |
T |
|
| Q |
242 |
gttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacattttgcaacccgtatcgcaattggttttatattgaattcgtg |
341 |
Q |
| |
|
||| ||||| |||||||||||| ||| || |||||||| || || |||||||||| | | || || || ||||||||||||||||||| || || |
|
|
| T |
30010180 |
ttttcttcctaaaagcctttgccacagtaacaatcaaaagcggaaatccagcacaacgtctggccacttttactacaattggttttatattgaaatcttg |
30010081 |
T |
|
| Q |
342 |
aacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattcttttttagtgcccatctcacaaatcaac |
441 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||| |||||||||||| |||||||||||||||||||||| | | ||| || | |||||| ||||| |
|
|
| T |
30010080 |
aacaacatcacctgccattttcttaaacaattgccaactatcctcctcatttaaaacttcaagtctaaattctctctgagtaccaaactcacagctcaac |
30009981 |
T |
|
| Q |
442 |
acattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtcaaatcaagtctcccccaaatgtcat |
541 |
Q |
| |
|
| ||| | |||||| ||||||||||||| || ||||||| ||||||||||||||| |||||||| ||||||||| | |||||||||| ||||||||||| |
|
|
| T |
30009980 |
aaattcatatctctagatgtcaccaccaccttacatcctttatgatcattaccaaatggaacccccagttctgtcgattcaagtctcctccaaatgtcat |
30009881 |
T |
|
| Q |
542 |
ccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||| | ||||||||||| ||||||||| |
|
|
| T |
30009880 |
ccagcacaacaagaatactcttctcctt |
30009853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 30056154 - 30056024
Alignment:
| Q |
17 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagaggacatccagtccaaaggaaccaattaataagaatag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
30056154 |
atttgtgagaatgtctaaataagcccaacccccaataacatacaaaaattggtccagtgtagcggtaatccagtccaaaggaaccaattaataagaatag |
30056055 |
T |
|
| Q |
117 |
caacttcagttcttcactctctaaacaatta |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30056054 |
caacttcagttcttcactctctaaacaatta |
30056024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 30028224 - 30028104
Alignment:
| Q |
85 |
tccagtccaaaggaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgca |
184 |
Q |
| |
|
||||||||||| |||| ||| || | ||| || ||||||| || || || ||||||||||||||||||| ||||| ||||| || |||||| |||||| |
|
|
| T |
30028224 |
tccagtccaaatgaacaaatgaaaaggaagagtgacttcaggtcatccctttctaaacaattataactcagttccaaggtagagtagactttcatatgca |
30028125 |
T |
|
| Q |
185 |
acccttcttgatcagatctct |
205 |
Q |
| |
|
| |||| ||||||| |||||| |
|
|
| T |
30028124 |
aaccttgttgatcaaatctct |
30028104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 30101223 - 30101103
Alignment:
| Q |
85 |
tccagtccaaaggaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgca |
184 |
Q |
| |
|
||||||||||| |||| ||| || | ||| || ||||||| || || || ||||||||||||||||||| ||||| ||||| || |||||| |||||| |
|
|
| T |
30101223 |
tccagtccaaatgaacaaatgaaaaggaagagtgacttcaggtcatccctttctaaacaattataactcagttccaaggtagagtagactttcatatgca |
30101124 |
T |
|
| Q |
185 |
acccttcttgatcagatctct |
205 |
Q |
| |
|
| |||| ||||||| |||||| |
|
|
| T |
30101123 |
aaccttgttgatcaaatctct |
30101103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 316 - 569
Target Start/End: Complemental strand, 30271972 - 30271721
Alignment:
| Q |
316 |
gcaattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctt |
415 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| | |||| |||||| |||||||| ||||||| |
|
|
| T |
30271972 |
gcaattggttttatattgaaatcttgaacaacatcacctgccattttctcaaacaatttccaactatcttgctcatgtaaaatttcaagtc--aattctt |
30271875 |
T |
|
| Q |
416 |
ttttagtgcccatctcacaaatcaacacattaagatctctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgt |
515 |
Q |
| |
|
||| |||||||||||||| | ||||||||||||||||| |||| |||||||||| |||||||||| ||||||| |||| |||||| ||| | ||| |
|
|
| T |
30271874 |
tttgagtgcccatctcacgattcaacacattaagatcttcggatatcaccaccaacttgcatcctttgtgatcatcaccacaaggaatccccacctcttc |
30271775 |
T |
|
| Q |
516 |
caaatcaagtctcccccaaatgtcatccaaaataacaagaatacgcttctcctt |
569 |
Q |
| |
|
||| |||||||| ||||| || ||||||| |||||||||||||| ||||||||| |
|
|
| T |
30271774 |
caattcaagtctaccccatatatcatccagaataacaagaatactcttctcctt |
30271721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 91 - 264
Target Start/End: Complemental strand, 30272171 - 30271999
Alignment:
| Q |
91 |
ccaaaggaaccaattaataagaatagcaacttcagttcttcactctctaaacaattataactcaattccagagtagaataaactttcttatgcaaccctt |
190 |
Q |
| |
|
||||| |||||||| |||||||| || |||| || || ||||| ||||| ||||||||||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
30272171 |
ccaaacgaaccaatgaataagaagagtgactttagctcgtcactttctaagcaattataactcaattccaaagtagaatagattttcttatgcaaccctt |
30272072 |
T |
|
| Q |
191 |
cttgatcagatctctgtaattcatttaaggcatccttccaattagagacttgttttttcctcaaagcctttgcc |
264 |
Q |
| |
|
||||||| |||||| ||| ||||| || | | ||||||| | ||| || |||||||||||||| ||||||| |
|
|
| T |
30272071 |
tttgatcaaatctctctaactcattcaatgtacttttccaatcaaaga-tttttttttcctcaaagactttgcc |
30271999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 525
Target Start/End: Complemental strand, 20474832 - 20474760
Alignment:
| Q |
453 |
tctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtcaaatcaagt |
525 |
Q |
| |
|
|||| |||||| || ||||||||| || | ||| ||||||||||| |||| ||||| |||| ||||||||||| |
|
|
| T |
20474832 |
tctgcatgtcatcaacaatttgcaaccattatgttcattaccaaatggaatccctacttctttcaaatcaagt |
20474760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 525
Target Start/End: Complemental strand, 23766 - 23694
Alignment:
| Q |
453 |
tctggatgtcaccaccaatttgcatccttcatgatcattaccaaaaggaacccctagttctgtcaaatcaagt |
525 |
Q |
| |
|
|||| |||||| || ||||||||| || | ||| ||||||||||| |||| ||||| |||| ||||||||||| |
|
|
| T |
23766 |
tctgcatgtcatcaacaatttgcaaccattatgttcattaccaaatggaatccctacttctttcaaatcaagt |
23694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University