View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_high_4 (Length: 307)
Name: NF9960_high_4
Description: NF9960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 40373777 - 40373506
Alignment:
| Q |
18 |
tactttactatatgcaaaactaaaaagggctaggtggtggatagccaccaaattaaaacaaagaatgatttgaggaatggatcctcttgtatatg--ata |
115 |
Q |
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| T |
40373777 |
tactttactatatgcaaaactaaaaagagctaggtggtggatagccaccaaattaaaacaacgaatgatttgaggaatggatcctcttgtatatgatata |
40373678 |
T |
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| Q |
116 |
tgctcatcattaaaatcttcaccatccattgaaaaataaaacgagttttaatgagggagaaacacaaggggaagcaaagagaatctattatc-------- |
207 |
Q |
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| T |
40373677 |
tgttcatcattaaaatcttcaccatccattaaaaaataaaatgagttttaatgagggagaaacacaaggggaagcagagagaatctattatctaggtttt |
40373578 |
T |
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| Q |
208 |
aacgttgcaaaacgagttaatccacttgagttgacctagtggtattggtttaggacttgagaatgtactcct |
279 |
Q |
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| T |
40373577 |
accgttgcaaaacgagttaatccacctgggatgacctagtggtattggtttgggacttgggaatgtactcct |
40373506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 26199512 - 26199562
Alignment:
| Q |
229 |
ccacttgagttgacctagtggtattggtttaggacttgagaatgtactcct |
279 |
Q |
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| T |
26199512 |
ccacttgagttggcctagtggtattggcttgggacctgagaatgtactcct |
26199562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 34293892 - 34293860
Alignment:
| Q |
226 |
aatccacttgagttgacctagtggtattggttt |
258 |
Q |
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| T |
34293892 |
aatccacttgggttgacctagtggtattggttt |
34293860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 24481584 - 24481624
Alignment:
| Q |
229 |
ccacttgagttgacctagtggtattggtttaggacttgaga |
269 |
Q |
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| T |
24481584 |
ccacttgagttggtctagtggtattggtttgggacttgaga |
24481624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 2379425 - 2379457
Alignment:
| Q |
226 |
aatccacttgagttgacctagtggtattggttt |
258 |
Q |
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| T |
2379425 |
aatccacttgggttgacctagtggtattggttt |
2379457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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