View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_high_5 (Length: 306)
Name: NF9960_high_5
Description: NF9960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 48254204 - 48254482
Alignment:
| Q |
18 |
atttggccacctttgtatatgaggtagtgaaagttcaattctatataaaaaataggtagcaacagatcagcattttatggcaaaatatatccattacacc |
117 |
Q |
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| T |
48254204 |
atttggccacctttgtatatgaggtagtgaaagttcaattctatataaaaaataggtagcaacagatcagcattttatggcaaaataaatccattacacc |
48254303 |
T |
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| Q |
118 |
aaacattactgttcaatcaaaaactgtttactatctgggggtttcaatggatatattattttgattatatccaggtggatgttcattaggcctacttgtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48254304 |
aaacattactgttcaatcaaaaactgtttactatctgggggtttcaatggatatattattttgattatatccatgtggatgttcattaggcctacttgtt |
48254403 |
T |
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| Q |
218 |
tgcaagtggcatatataaccaaataatattagtctacatcacacattttcggttcattatcaatttaccatcacctatg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48254404 |
tgcaagtggcatatataaccaaataatattagtctacatcacacattttcggttcattatcaatttaccatcacctatg |
48254482 |
T |
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