View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_low_10 (Length: 265)
Name: NF9960_low_10
Description: NF9960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 15785025 - 15785264
Alignment:
| Q |
18 |
acttatcctcctgtccaaaaatctctcccacatgtaagctggaattgatatgaatgtccttctacatttggtggtttgactttgaacaatataggtttgg |
117 |
Q |
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| T |
15785025 |
acttatcctcctgtccaaaaatctctcccacatgtaagctggaattgatatgaatgtcctactacatttggtggtttgactttgaacaatataggtttgg |
15785124 |
T |
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| Q |
118 |
tctccttataccaattaatggtccaccaattctagggtgcacttgataactatgccatgttgattcttgaannnnnnnnnnnnnnnnnnnnctactaaca |
217 |
Q |
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| T |
15785125 |
tctccttataccaattaatggtccaccaattctagggtgcacttgataactatgccatgttgattcttgaatattattattattattattactactaaca |
15785224 |
T |
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| Q |
218 |
gcagaaaggaactaactattttattaagctcataccacca |
257 |
Q |
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| T |
15785225 |
gcagaaaggaactaactattttattaagctcataccacca |
15785264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 1347508 - 1347437
Alignment:
| Q |
98 |
tttgaacaatataggtttggtctccttataccaattaatggtccaccaattctagggtgcacttgataacta |
169 |
Q |
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| T |
1347508 |
tttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtacacttaataacta |
1347437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 8675690 - 8675765
Alignment:
| Q |
98 |
tttgaacaatataggtttggtctccttataccaattaat-ggtccaccaattctagggtgcacttgataactatgc |
172 |
Q |
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| T |
8675690 |
tttgaacaatacaggcttggtctccttatacaaatcaaacggtcttccaattctagggtgcacttgataactatgc |
8675765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 13711827 - 13711781
Alignment:
| Q |
20 |
ttatcctcctgtccaaaaatctctcccacatgtaagctggaattgat |
66 |
Q |
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| T |
13711827 |
ttatcctcctgtccaacaatctctcctacatgtaagttggaattgat |
13711781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 19653592 - 19653540
Alignment:
| Q |
20 |
ttatcctcctgtccaaaaatctctcccacatgtaagctggaattgatatgaat |
72 |
Q |
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| T |
19653592 |
ttatcctcctgtcctacaatctcgcccacgtgtaagctggaagtgatatgaat |
19653540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 17377689 - 17377727
Alignment:
| Q |
20 |
ttatcctcctgtccaaaaatctctcccacatgtaagctg |
58 |
Q |
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| T |
17377689 |
ttatcctcctgtccaaggatctctcccacatgtaagctg |
17377727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 17392797 - 17392835
Alignment:
| Q |
20 |
ttatcctcctgtccaaaaatctctcccacatgtaagctg |
58 |
Q |
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| T |
17392797 |
ttatcctcctgtccaagaatgtctcccacatgtaagctg |
17392835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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