View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_low_4 (Length: 416)
Name: NF9960_low_4
Description: NF9960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 233 - 405
Target Start/End: Original strand, 12662417 - 12662587
Alignment:
| Q |
233 |
ttaatatatagttttcaatctttgtttttctaaattttatcaacaaaagaaaaattgtattaactatggttttgtcaacaaaagaaattgtattatatta |
332 |
Q |
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| T |
12662417 |
ttaatatatagttttcaatctttgtttttttaaattttatcaacaaaagaaaaattgtattaactatggttttgtcaacaaaa-aaattgtattatatta |
12662515 |
T |
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| Q |
333 |
cttagnnnnnnnnnnnggtaaagtagcatattggcttaagctcactcattttaaattttaagaagtgatgtgt |
405 |
Q |
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| T |
12662516 |
ctaag-ttctttttttggcaaagtagcatatcggctaaagctcattcattttaaatttgaagaagtgatgtgt |
12662587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 12662112 - 12662219
Alignment:
| Q |
18 |
atatacattatttgatcatatgaagctaatttagcctagcaacttatagggtgtcatctgcaagctaaagagaagtaaaataaagcaaccacaaaatatt |
117 |
Q |
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| T |
12662112 |
atatacattatttgatcatatgaagctattttagcctagcaacttatagggtgtcatctgcaggctaaagagaagtaaaataaagcaaccacaaaatatt |
12662211 |
T |
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| Q |
118 |
attgaatt |
125 |
Q |
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| T |
12662212 |
atagaatt |
12662219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 12662275 - 12662348
Alignment:
| Q |
159 |
ttttacttctttatttaagacgacaagataaaatacctcgaactccaaccagcactatgtctagaatcctttaa |
232 |
Q |
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| T |
12662275 |
ttttacttctttatttaagacgaaaagataaaatacctcgaactccaaccagcactatgtctagaatcctttaa |
12662348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 12662216 - 12662251
Alignment:
| Q |
133 |
aattaaatgaatctattttcagggctttttacttctt |
169 |
Q |
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| T |
12662216 |
aattaaatgaatctattttca-ggctttttacttctt |
12662251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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