View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_low_8 (Length: 292)

Name: NF9960_low_8
Description: NF9960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_low_8
NF9960_low_8
[»] chr4 (13 HSPs)
chr4 (18-278)||(3955996-3956256)
chr4 (19-278)||(4009353-4009612)
chr4 (21-279)||(4024591-4024849)
chr4 (18-279)||(3986351-3986612)
chr4 (30-279)||(3800954-3801203)
chr4 (18-279)||(3920251-3920512)
chr4 (18-279)||(3816952-3817213)
chr4 (18-279)||(3933475-3933736)
chr4 (18-278)||(4001662-4001920)
chr4 (19-218)||(4217997-4218196)
chr4 (18-279)||(3809369-3809630)
chr4 (42-276)||(3963777-3964011)
chr4 (18-276)||(4018073-4018331)
[»] chr5 (1 HSPs)
chr5 (18-279)||(13397303-13397564)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 3956256 - 3955996
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||| |||||||||||||||||    
3956256 aacattatcttcagaaattgttataagagatttatctttcaacctttctaaaccaacagccactgcattatcactttcaaaatctttcaataaaagtttc 3956157  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
3956156 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagcctcatta 3956057  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttc 278  Q
    |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
3956056 catcttgaaattttttatttggcagtcttttaagtttgtccagctgactttcccattcttc 3955996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 4009353 - 4009612
Alignment:
19 acattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttca 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||    
4009353 acattatcttcagaaattgttataagagctttatcttttaacctttctaacccaatagccactgcattatcactttcaaaatctttcaataaaagtttca 4009452  T
119 tgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattac 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
4009453 tgcaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagcctcattac 4009552  T
219 atcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttc 278  Q
    ||| |||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||    
4009553 atcttgaatttttttattcggcagtcttttaagtttgtccagctgactttcccattcttc 4009612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 4024591 - 4024849
Alignment:
21 attatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttcatg 120  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||| || ||||||||||||||||||||    
4024591 attatcttcagaaatagttataagagctttatctctcaacctttctaaaccaacagccactgaattatcgctttcacaatctttcaataaaagtttcatg 4024690  T
121 taatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacat 220  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
4024691 taatccactttcaaattcaacccgttgaagaaacatgcaatatctaaaaaatactttttctctaaacgatcaagatcatcataacttagtctcattacat 4024790  T
221 catgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttct 279  Q
    |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||    
4024791 catgaactttttgaactggcagtcttttaagtttgtctagctgactttcccatacttct 4024849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 3986351 - 3986612
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| || |||||||||||||||||    
3986351 aacattatcttcagaaatagttatgagagctttatctttcaacctttctatcccaacagccactgaattatcaccttcacaatctttcaataaaagtttc 3986450  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||    
3986451 atgtaatccactttcaaactcaacccattgaagaaacatgcaatatctaaaaaatactttttctctaaacgatcaagatcatcgtaactgagtttcacta 3986550  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttct 279  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
3986551 catcatgaacttttttaactggcagtcttttaagtttgtctagctgactttcccatacttct 3986612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 3800954 - 3801203
Alignment:
30 agaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttcatgtaatccact 129  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||| ||||| ||||||||||||||||    
3800954 agaaatagttataagagctttatcttttaacctttctaacccaacagccactgaattatcactttcacaatctttcagtaaaattttcatgtaatccact 3801053  T
130 ttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaactt 229  Q
    |||||  ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
3801054 ttcaaattcaacccattgaagaaacatgcaatatctaaaaaatactttttctctaaatgatcaagatcatcataactgagtctcattacatcatgaactt 3801153  T
230 ttttaattggcagtcttttaagtttgtccagctgactttcccatacttct 279  Q
     || |||||||||||||||||||||||| ||| |||||||||||||||||    
3801154 cttgaattggcagtcttttaagtttgtctagcagactttcccatacttct 3801203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 3920512 - 3920251
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| || ||||  |||||||||| ||| || ||||||||||| |||||    
3920512 aacattatcttcagaaatagttataagagctttatctttcaagctttctaacccaccagccacgtaattatcactatcacaatctttcaataaatgtttc 3920413  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||    
3920412 atgtaatccactttcaaattcaacccattgaagaaacatgcaatatctaaaaaatactttttctctaaacgatcaagatcatcataactgagtttcacta 3920313  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttct 279  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||    
3920312 catcatgaactttttgaactggcagtcttttaagtttgtctagctgactttcccatacttct 3920251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 3816952 - 3817213
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || ||||  |||||||||| ||| || ||||||||||| |||||    
3816952 aacattatcttcagaaatagttataagagctttatctttcaacgtttctaacccaccagccacgtaattatcactatcacaatctttcaataaatgtttc 3817051  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    |||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
3817052 atgtaatccactttcaaatccaacccattgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattg 3817151  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttct 279  Q
    |||||| |||||||| || |||||||||| |||||||||| |||||||||||||||||||||    
3817152 catcataaactttttgaactggcagtcttctaagtttgtctagctgactttcccatacttct 3817213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 3933736 - 3933475
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || ||||  |||||||||| ||| || ||||||||||| |||||    
3933736 aacattatcttcagaaatagttataagagctttatctttcaacgtttctaacccaccagccacgtaattatcactatcacaatctttcaataaatgtttc 3933637  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    |||||||||| || |||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
3933636 atgtaatccaattccaaatccaacccattgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactaagcctcatta 3933537  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttct 279  Q
    ||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||||    
3933536 catcatgaacttttggaattggcagtcttttaagtttgtctagcttactttcccatacttct 3933475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 4001662 - 4001920
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    |||||||| ||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    |||  |||| | |||||    
4001662 aacattatatttcgaaatagttataagagctttatctttcaacctttctaaaccaacaaccactgaattgtcactttcagtctctt--aatagatgtttc 4001759  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4001760 atgtaatccactttcaaattcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 4001859  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttc 278  Q
    |||||| |||||||||| |||| ||| |||||||||| || ||||||||||||||||||||    
4001860 catcataaacttttttacttggaagttttttaagtttatcaagctgactttcccatacttc 4001920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 4217997 - 4218196
Alignment:
19 acattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttca 118  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| || ||||||||||||||||||    
4217997 acattatcttcagaaatagtaataagagctttatctttcaacctttctaacccaacggccactgaattatcactttcataatctttcaataaaagtttca 4218096  T
119 tgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattac 218  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
4218097 tgtaatccactttcaaattcaacccattgaagaaacatgcaatatctaaaaaatacttttgctctaagagatcaagatcatcataactgagtctcattac 4218196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 3809369 - 3809630
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    |||||||| ||||||||| |||||||||||||| |||||||| |||||||||||| || |||||||||||||||| | | || |||||||||||||| |     
3809369 aacattatattcagaaatagttataagagctttgtctttcaagctttctaacccagcagccactgaattatcactgttagaatctttcaataaaagtgtt 3809468  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    |||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||    
3809469 atgtaacccactctcaaactcaacccattgaagaaacatgcaatatctaaaaaatacttcttctctaaaggatcaagatcatcataactgagtctcatta 3809568  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttct 279  Q
    | | || ||||| || || |||||||||| |||||||||| |||||||||||||||||||||    
3809569 ctttatcaacttcttgaactggcagtcttctaagtttgtctagctgactttcccatacttct 3809630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 276
Target Start/End: Complemental strand, 3964011 - 3963777
Alignment:
42 aagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttcatgtaatccactttcaacctcaac 141  Q
    |||| ||||||||||||||||||||||||||    | |||||||||||||||||| || ||||| | || ||||| | ||| |||||||||||  || ||    
3964011 aagatctttatctttcaacctttctaacccactggctactgaattatcactttcagaatctttccacaatagttttaggtagtccactttcaaattcgac 3963912  T
142 ccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggca 241  Q
    || ||||| |||||||||||||||||||||  ||||||||||   ||||| |||||||||||||| | |||||||||||| |||||||||||| ||||||    
3963911 ccattgaaaaaacatgcaatatctaaaaaaatcttttgctcttcgcgatctagatcatcataactcaatctcattacatcttgaacttttttacttggca 3963812  T
242 gtcttttaagtttgtccagctgactttcccatact 276  Q
     | || |||| ||||| || |||||||||||||||    
3963811 tttttctaagcttgtctagttgactttcccatact 3963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 4018073 - 4018331
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    ||||||||||| |||||  | ||||||| ||||||||||||||||||||||||||    | |||||||||||||||||| || ||||||| |||| |||     
4018073 aacattatctttagaaaaagatataagacctttatctttcaacctttctaacccactggctactgaattatcactttcagaatctttcaacaaaaatttt 4018172  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    ||||| |||||||||||  |  | || ||||| |||||||||| |||| |||||  ||||| ||||   ||||| |||||||||||||| | |||| |||    
4018173 atgtagtccactttcaaatttgatccattgaaaaaacatgcaagatctgaaaaaatctttttctctttgcgatccagatcatcataactcaatctcgtta 4018272  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatact 276  Q
    |||| |||||||||||| |||||| | ||||||| ||||| || |||||||||||||||    
4018273 catcttgaacttttttacttggcatttttttaagcttgtctagttgactttcccatact 4018331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 13397303 - 13397564
Alignment:
18 aacattatcttcagaaattgttataagagctttatctttcaacctttctaacccaacaaccactgaattatcactttcaaaacctttcaataaaagtttc 117  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||| || |||||||||||||||||    
13397303 aacattatctttagaaatagttataagagctttatctttcaacctttctaacccaatagctacagaattatcactttcataatctttcaataaaagtttc 13397402  T
118 atgtaatccactttcaacctcaacccgttgaagaaacatgcaatatctaaaaaatacttttgctctaaacgatcaagatcatcataactgagtctcatta 217  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
13397403 atgtactccactttcaaactcatcccgttgaagaaacatgcaatatctaaaaaatacttctgctctaaacgatcaagatcatcaaaactgagtctcatta 13397502  T
218 catcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttct 279  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
13397503 catcatgaactttttgaattggcagtcttttaagtttgtctagctgactttcccatagttct 13397564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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