View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_low_9 (Length: 285)
Name: NF9960_low_9
Description: NF9960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 36946478 - 36946669
Alignment:
| Q |
1 |
aatttccaaatgggatttccttaagcaaggatgattccttctttgtattttcagaaggagtaatcggaaggtgtgtgaataatcaacaaaaccctttttc |
100 |
Q |
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| T |
36946478 |
aatttccaaatgggatttccttaagcaaggatggttccttctttgtattttcagaaggagtaattggaaggtgtgtgaataatcaacataaccctttttt |
36946577 |
T |
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| Q |
101 |
cgt-------caatacactaatgatgc-aacaagttttacaaagacgtccaacatattttgccattctgacacaatatgtttagaaagtaat |
184 |
Q |
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| T |
36946578 |
cgtctaataacgatacactaatgatgcaaacaagttttacaaagacgttcaaaatattttcccattctgacacaatatgtttagaaagtaat |
36946669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 36946753 - 36946831
Alignment:
| Q |
190 |
tgtaaagttattaatcttttcgtttataactatattcaagtccgttttttctgtaggctaagcaagtactggctaaaag |
268 |
Q |
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| T |
36946753 |
tgtaaagttattaaacttttcatttattactatattcaagtcccttttttctgtaggttatgcaagtattggctaaaag |
36946831 |
T |
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