View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_high_19 (Length: 375)
Name: NF9961_high_19
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 42 - 365
Target Start/End: Original strand, 10212863 - 10213207
Alignment:
| Q |
42 |
ataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatatgaca--gatgaaattgctttgcacttgggggattttcaacctc |
139 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
10212863 |
ataagctgatctaacacctttacgcaactcagtcacctgcaacattcgtttaaaaatgacaaagatgaaattgctttgcacttgggggatattcaacctc |
10212962 |
T |
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| Q |
140 |
atttcttctcaaaaatattatattagtataaacatatcaaaga------------------ccataagcagagaaataaccagcattcagcgaaccggat |
221 |
Q |
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| T |
10212963 |
atctcttctcaaaaatattatattagtataaacatatctaagaatgatttatgtaccttatccataagcagagaaataacaggcattcgacgaacctgat |
10213062 |
T |
|
| Q |
222 |
tcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatatttcaagagaatgaaattaaggtatttagaaattttaagaa |
321 |
Q |
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|| |||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
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| T |
10213063 |
tcagaaaattttaagatgtaaataaacatataagtttaacaaaacaacaatttgcaatatttaaagagaatgaaatttagatatttagaaattttaagaa |
10213162 |
T |
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| Q |
322 |
acggcctcataaat-cctttaaaacttaaataaatgcaacctttg |
365 |
Q |
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| T |
10213163 |
acggccgcctaaatccctttaaaacttaaataaatgcaacctttg |
10213207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 41 - 283
Target Start/End: Complemental strand, 10105413 - 10105150
Alignment:
| Q |
41 |
gataagctgatctgacacctttatacaactcagtcacctgcaacattcgtttacatatgaca--gatgaaattgctttgcacttgggggattttcaacct |
138 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
10105413 |
gataagctgatctgacacctgtacacaactcagtcacctgcaacattcatttaaaaatgacaaagatgaaattgctttgcacttgcgggatattcaacct |
10105314 |
T |
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| Q |
139 |
catttcttctcaaaaatattatattagtataaacatatcaaaga-------------------ccataagcagagaaataaccagcattcagcgaaccgg |
219 |
Q |
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||| |||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||| ||||||| | |
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| T |
10105313 |
catctcttctcaaaaatattatattagtctaaacatatgtaagaattatttctgtacactcatccataagcagagaaataacaggcatttggcgaacctg |
10105214 |
T |
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| Q |
220 |
attcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatattt |
283 |
Q |
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| T |
10105213 |
attcacaaaattttaagatgtacataagcatacatgttcaacaaaacaacaatttgcaatattt |
10105150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 329
Target Start/End: Original strand, 9675522 - 9675660
Alignment:
| Q |
183 |
ccataagcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatatt |
282 |
Q |
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| T |
9675522 |
ccataagcagagatataaccggcattcgtcgaacctgattcacaaaagtttaagatgtaaataagcatataagtt--------caacaatatgcaatatt |
9675613 |
T |
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| Q |
283 |
tcaagagaatgaaattaaggtatttagaaattttaagaaacggcctc |
329 |
Q |
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| T |
9675614 |
aaaagagaatgaaattaaggtatttggaaatttaaagaaaaggcctc |
9675660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 9677191 - 9677280
Alignment:
| Q |
276 |
caatatttcaagagaatgaaattaaggtatttagaaattttaagaaacggcctcataaatcctttaaaacttaaataaatgcaacctttg |
365 |
Q |
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| T |
9677191 |
caatatttaaagagagtgaaattaaggtatttataaattttaagaaacagcctcataaatcctttaaaacttacataaatgtgacctttg |
9677280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 12105294 - 12105371
Alignment:
| Q |
285 |
aagagaatgaaattaaggtatttagaaattttaagaaacggcctcataaatcctttaaaacttaaataaatgcaacct |
362 |
Q |
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| T |
12105294 |
aagagaatgaaattaagatatttagaaattttaagaaacagcctcataaatcctttaaaacatacataaatgcgacct |
12105371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 9683324 - 9683380
Alignment:
| Q |
102 |
agatgaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatatta |
159 |
Q |
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| T |
9683324 |
agatgaaattgctttgcactt-ggggatattcaacctcgtctcttatcaaaaatatta |
9683380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 9675430 - 9675486
Alignment:
| Q |
106 |
gaaattgctttgcacttgggggattttcaacctcatttcttctcaaaaatattatat |
162 |
Q |
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| T |
9675430 |
gaaattgctttgcacttcggggatattcaacctcgtctcttctcaaaattaatatat |
9675486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 10102629 - 10102593
Alignment:
| Q |
65 |
acaactcagtcacctgcaacattcgtttacatatgac |
101 |
Q |
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| T |
10102629 |
acaactcagtcacctgcaacattcgtttacaaatgac |
10102593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 9683423 - 9683509
Alignment:
| Q |
185 |
ataagcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaa |
271 |
Q |
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|||||||| ||||||||| |||||| | ||||| ||| | | ||||||||||| | | ||||||||||| |||| ||||||||||| |
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| T |
9683423 |
ataagcagggaaataaccggcattctgagaacctgatacacgaaagtttaagatgcatataagcatatatgttcagcaaaacaacaa |
9683509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 10210638 - 10210720
Alignment:
| Q |
185 |
ataagcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaaca |
267 |
Q |
| |
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||||||||| ||||||| ||||||| | ||||| ||||| ||||||||||||| || ||||||| ||| ||| |||||||| |
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| T |
10210638 |
ataagcagataaataacaagcattctgagaacctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaaaaca |
10210720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 10211009 - 10211047
Alignment:
| Q |
327 |
ctcataaatcctttaaaacttaaataaatgcaacctttg |
365 |
Q |
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| T |
10211009 |
ctcataaatcctataaaacttacataaatgcaacctttg |
10211047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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