View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_high_22 (Length: 366)
Name: NF9961_high_22
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 14722726 - 14723050
Alignment:
| Q |
7 |
atatcatcctcatttttgtgtactaacatgtggaccttcccaactactagaatcgtattccacttttctggtgatgttggatgtgagattgattattctt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14722726 |
atatcatcctcatttttgtgtactaacatgtggaccttcccaactactagaatcgtattccacttttctggtgatgttggatgtgagattgattattctt |
14722825 |
T |
|
| Q |
107 |
tggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgattattcaactgcatccttaataattaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14722826 |
tggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgtttattcaactgcatccttaataattaat |
14722925 |
T |
|
| Q |
207 |
atcattaagctcttccttgctacgcatccaaatgctgctatcgctcatcctccaaaaccagaaccacacgatccatctgcatctctggagtttgtaattt |
306 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14722926 |
atcactaagctcttccttgctacgcatccaaatgctgctatcgctcatcctccaaaaccggaaccacacgatccatctgcatctctggagtttgtaattt |
14723025 |
T |
|
| Q |
307 |
gcaatgcatatgaagccatgtgact |
331 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14723026 |
gcaatgcatatgaagccatgtgact |
14723050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 24634358 - 24634208
Alignment:
| Q |
46 |
ccaactactagaatcgtattccacttttctggtgatgttggatgtgagattgattattctttggattctactccctaagttctggaattggtatattatc |
145 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24634358 |
ccaactactatgatcatattccacttttctggtgttattggatgtgagacac----ttctttggattctactccctaagttctggaattggtatatcatc |
24634263 |
T |
|
| Q |
146 |
aaccttttccttttattcgttactttgctatgattattcaactgcatccttaata |
200 |
Q |
| |
|
|| || ||||||||| | |||| || |||| || ||||||||||||||||||| |
|
|
| T |
24634262 |
aatctattccttttaatggttatttcattatgtttcttcaactgcatccttaata |
24634208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 24679977 - 24679885
Alignment:
| Q |
102 |
ttctttggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgattattcaactgcatcc |
194 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||| | ||||||||| | ||||||| |||| || ||||||||||||| |
|
|
| T |
24679977 |
ttctttggattctactccctgaattctggaattggtatattatcaacttattccttttaatggttacttctttatgtttcttcaactgcatcc |
24679885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 24656410 - 24656352
Alignment:
| Q |
102 |
ttctttggattctactccctaagttctggaattggtatattatcaaccttttcctttta |
160 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
24656410 |
ttctttggattctgctccctgatttctggaattggtatatcatcaacttattcctttta |
24656352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 24676917 - 24676864
Alignment:
| Q |
107 |
tggattctactccctaagttctggaattggtatattatcaaccttttcctttta |
160 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||| || | ||||||| |
|
|
| T |
24676917 |
tggattctactccctgacttctggaattggtatatcatcaatctatccctttta |
24676864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University