View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_high_38 (Length: 240)
Name: NF9961_high_38
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 5022429 - 5022578
Alignment:
| Q |
74 |
gtagatgatgtctcacttccgccaataagcatatcctgcaccatgatagtgagatctcatgaagaaagattcaaataatataattccattgggattgaaa |
173 |
Q |
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| T |
5022429 |
gtagatgatgtctcacttccaccaataagcatatcctgcaccatgatagtgagatctcatgaagaaagattcaaataatataattccattgggattgaaa |
5022528 |
T |
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| Q |
174 |
attcaagattctttgaaaatacagattacctctgtctagaatacttcatt |
223 |
Q |
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| T |
5022529 |
attcaagattatttgaaaatacagattacctctgtctagaatacttcatt |
5022578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5022305 - 5022380
Alignment:
| Q |
1 |
tcttgaagatccacttcatcaacatatcctcttccactaaaaacctgtctaacttcttcttgagccctaatcagta |
76 |
Q |
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| T |
5022305 |
tcttgaagatccacttcatcaacatatcctgttccactaaaaacctgtctaacttcttcttgagccctaatcagta |
5022380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41654483 - 41654418
Alignment:
| Q |
1 |
tcttgaagatccacttcatcaacatatcctcttccactaaaaacctgtctaacttcttcttgagcc |
66 |
Q |
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| T |
41654483 |
tcttgaagatctttttcatcaacatatcctctgctaccaaaagcttgtctaacttcttcttgagcc |
41654418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 41654360 - 41654304
Alignment:
| Q |
77 |
gatgatgtctcacttccgccaataagcatatcctgcaccatgatagtgagatctcat |
133 |
Q |
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| T |
41654360 |
gatgatgtctcacttccaccaataagcatagtctgcactaggagagtgagatctcat |
41654304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 41646934 - 41646883
Alignment:
| Q |
15 |
ttcatcaacatatcctcttccactaaaaacctgtctaacttcttcttgagcc |
66 |
Q |
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| T |
41646934 |
ttcatcaacatatcctctgctaccaaaagcttgtctaacttcttcttgagcc |
41646883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 41621054 - 41621107
Alignment:
| Q |
15 |
ttcatcaacatatcctcttccactaaaaacctgtctaacttcttcttgagccct |
68 |
Q |
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| T |
41621054 |
ttcatcaacatatcctctgctaacaaaagcatgtctaacttcttcttgagccct |
41621107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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