View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_high_49 (Length: 220)
Name: NF9961_high_49
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_high_49 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 24722215 - 24722382
Alignment:
| Q |
30 |
caagaagggttgagcgtcctagaggaggaggtgtttgtcaatctttggatgagtctggctccttccaaagtagcggctttttcttggatggctttgatgg |
129 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| ||||||||||| ||||| | |||| |||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
24722215 |
caagaagggttgagtgtgttagaggaggaggtgtttgacaatctttggaagagtccgactccctccaaagttgtggctttttcttggatggccttgatgg |
24722314 |
T |
|
| Q |
130 |
accgtattccgacaagggctaaccttaggcaccaaagtgttttggcccccgggtaaccttgtgtttgt |
197 |
Q |
| |
|
| |||||| |||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||| |
|
|
| T |
24722315 |
atcgtatttcgacaagggctaaccttaggcaccgaagtgttttggcccccggggatctttgtgtttgt |
24722382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 22905095 - 22904952
Alignment:
| Q |
54 |
gaggaggtgtttgtcaatctttggatgagtctggctccttccaaagtagcggctttttcttggatggctttgatggaccgtattccgacaagggctaacc |
153 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
22905095 |
gaggaggtgtttgctaatctttggaagagtccggctccgtccaaagtcgtggctttttcttggatggccttgatggaccgtattccgacaagggctaatc |
22904996 |
T |
|
| Q |
154 |
ttaggcaccaaagtgttttggcccccgggtaaccttgtgtttgt |
197 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
22904995 |
ttaggcaccagagtgttttggctcccggggaaccttgtgtttgt |
22904952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 22956763 - 22956620
Alignment:
| Q |
54 |
gaggaggtgtttgtcaatctttggatgagtctggctccttccaaagtagcggctttttcttggatggctttgatggaccgtattccgacaagggctaacc |
153 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
22956763 |
gaggaggtgtttgctaatctttggaagagtccggctccgtccaaagtcgtggctttttcttggatggccttgatggaccgtattccgacaagggctaatc |
22956664 |
T |
|
| Q |
154 |
ttaggcaccaaagtgttttggcccccgggtaaccttgtgtttgt |
197 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
22956663 |
ttaggcaccagagtgttttggctcccggggaaccttgtgtttgt |
22956620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 43441886 - 43441708
Alignment:
| Q |
19 |
gtgttctccaccaagaagggttgagcgtcctagaggaggaggtgtttgtcaatctttggatgagtctggctccttccaaagtagcggctttttcttggat |
118 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||| |||||| |||||||| | ||||||||||||||| |
|
|
| T |
43441886 |
gtgtgctccaccaagaagggttgagtggtttagaggaggaggtgttttccaatctttggaagagtccggctccgtccaaagtcgtggctttttcttggat |
43441787 |
T |
|
| Q |
119 |
ggctttgatggaccgtattccgacaagggctaaccttaggcaccaaagtgttttggcccccgggtaaccttgtgtttgt |
197 |
Q |
| |
|
||| |||| ||||||||||||||||||| |||| |||||||||| | ||||||||| ||| || |||||||||||||| |
|
|
| T |
43441786 |
ggccttgagggaccgtattccgacaaggactaatcttaggcaccggaatgttttggctcccagggaaccttgtgtttgt |
43441708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 52116613 - 52116527
Alignment:
| Q |
121 |
ctttgatggaccgtattccgacaagggctaaccttaggcaccaaagtgttttggcccccgggtaaccttgtgtttgtattctctgtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
52116613 |
ctttgatggaccgtattccgacaagggctaaccttgggcactagagtgttttggcccccggggaaccttgtgtttgtattctttgtg |
52116527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 52116666 - 52116609
Alignment:
| Q |
19 |
gtgttctccaccaagaagggttgagcgtcctagaggaggaggtgtttgtcaatctttg |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52116666 |
gtgttctccaccaagaagggttgagcgtcctagaggaggaggtgttagtcaatctttg |
52116609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 1466875 - 1466802
Alignment:
| Q |
69 |
aatctttggatgagtctggctccttccaaagtagcggctttttcttggatggctttgatggaccgtattccgac |
142 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| | ||||||||||||||||| || | |||||||||||||| |
|
|
| T |
1466875 |
aatctttggaggagtctggctccatccaaagtggttgctttttcttggatggccttcctagaccgtattccgac |
1466802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 27408661 - 27408494
Alignment:
| Q |
30 |
caagaagggttgagcgtcctagaggaggaggtgtttgtcaatctttggatgagtctggctccttccaaagtagcggctttttcttggatggctttgatgg |
129 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||| ||||||||||| ||| | |||||| |||||||| | ||| |||||||||||||| ||||||| |
|
|
| T |
27408661 |
caagaagggttgagtgtgttagaggagaaggtgtttgacaatctttggaagagaccggctccctccaaagttgtggcattttcttggatggccttgatgg |
27408562 |
T |
|
| Q |
130 |
accgtattccgacaagggctaaccttaggcaccaaagtgttttggcccccgggtaaccttgtgtttgt |
197 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||||||||| | |||||||||||| |
|
|
| T |
27408561 |
accgtatttcgacaagggctaaccttaggtgccgaagtgttttggcccccggggatccttgtgtttgt |
27408494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 30503532 - 30503423
Alignment:
| Q |
30 |
caagaagggttgagcgtcctagaggaggaggtgtttgtcaatctttggatgagtctggctccttccaaagtagcggctttttcttggatggctttgatgg |
129 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| | ||||||||||| ||||| |||||| || ||||| | |||||||||||||||||| | |||| |
|
|
| T |
30503532 |
caagaagggttgagtgtgctagaggaggaagtgttcgccaatctttggaggagtccggctccctctaaagttgtggctttttcttggatggcgcttatgg |
30503433 |
T |
|
| Q |
130 |
accgtattcc |
139 |
Q |
| |
|
|||||||||| |
|
|
| T |
30503432 |
accgtattcc |
30503423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University