View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_high_5 (Length: 543)
Name: NF9961_high_5
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 3557914 - 3558440
Alignment:
| Q |
1 |
tgtgaaaacaaagaaatggagtcgtttgaacaatgctgtgttgatatttgataaaaaacaccctttgcttttgaagtttattgaggaatttgcacttact |
100 |
Q |
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| T |
3557914 |
tgtgaaaacaaagaaatggagtcgtttgaacaatgctgtgttgatatttgataaaaaacaccctttgcttttgaagtttattgaggaatttgcacttact |
3558013 |
T |
|
| Q |
101 |
tttgatggtaacaagtgggggcataatggtccttatttaacatctagagtggtttctagagtaagtggaagagaagggtataatttcagtgtggttccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3558014 |
tttgatggtaacaagtgggggcataatggtccttatttaatatctagagtggtttctagagtaagtggaagagaagggtataatttcagtgtggttccac |
3558113 |
T |
|
| Q |
201 |
cttctgcattttatcctgtggattggagaggtataaagagtttgtttagaggacctagtgatgagattcattcaaaatggttggttaagaaaatggtgca |
300 |
Q |
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| T |
3558114 |
cttctgcattttatcctgtggattggagaggtataaagagtttgtttagaggacctggtgatgagattcattcaaaatggttggttaagaaaatggtgca |
3558213 |
T |
|
| Q |
301 |
aattagaaaagaaagttatgcagtgcatctttggaataggcaaagtgggaagcttaaggttgttaaaggaagtattattgatagcattatatctagttgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3558214 |
aattagaaaagaaagttatgcagtgcatctttggaataggcaaagtgggaagcttgaggttgttaaaggaagtattattgatagcattatatctagttgt |
3558313 |
T |
|
| Q |
401 |
tgcattttttgcaacacttattaggttcttaattaagtttgtagttagtgtcttagaattactagtttaaagtttaaacaatggttgtgttgcaacttgc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3558314 |
tgcattttttgcaacacttattaggttcttaattaagtttgtagttagtgtcttagaattactagtttaaagtttaaacaatggttgtgttgcaacttgc |
3558413 |
T |
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| Q |
501 |
aacttataattagtcatggaccaattg |
527 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3558414 |
aacttataattagtcatggaccaattg |
3558440 |
T |
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