View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_high_51 (Length: 219)
Name: NF9961_high_51
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_high_51 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 28591039 - 28590864
Alignment:
| Q |
1 |
atcagttgttgaatttcaaggtgtttctggttctgctactgtaaccaagttaggtgaatcttctaaagatgctaatcagaaatccattgttgcgatggat |
100 |
Q |
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| T |
28591039 |
atcagttgttgaatttcaaggtgtttctggttctgctactgtaaccaagttaggtgaatcttctaaagttgctaatcagaaatccattgttgcgatggat |
28590940 |
T |
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| Q |
101 |
tctgatgcttccnnnnnnnttattgttcatagcgctggccatcgtacttcagcttacagaggagtcacaaggtatg |
176 |
Q |
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| T |
28590939 |
tctgatgcttccaaaaaaattactgttcatagcgctggccatcgtacttcagcttacagaggagtcacaaggtatg |
28590864 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 6676304 - 6676355
Alignment:
| Q |
124 |
tgttcatagcgctggccatcgtacttcagcttacagaggagtcacaaggtat |
175 |
Q |
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| T |
6676304 |
tgttcatagcactggccattgcacttcagtttacataggagtcacaaggtat |
6676355 |
T |
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