View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_high_6 (Length: 481)
Name: NF9961_high_6
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Original strand, 1875360 - 1875826
Alignment:
| Q |
15 |
cataggtgttgtaacagtgaagaaagtggtgnnnnnnngaagactagtagagtgaaaaagattgttttttcacttccttctgcttttgtaatctttgttt |
114 |
Q |
| |
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|||||||||||||| |||||||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1875360 |
cataggtgttgtaatagtgaagaaagtggtgaaaaaaagaggacaagtagagtgaaaaagattcttttttcacttccttctgcttttgtaatctttgttt |
1875459 |
T |
|
| Q |
115 |
taggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagtttggaccctcttcaatagaagtggtgaaattcactaaacatgcttg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875460 |
taggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagtttggaccctcttcaatagaagtggtgaaattcactaaacatgcttg |
1875559 |
T |
|
| Q |
215 |
gaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaa |
314 |
Q |
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| T |
1875560 |
gaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaa |
1875659 |
T |
|
| Q |
315 |
aaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875660 |
aaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggac |
1875759 |
T |
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| Q |
415 |
tagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttggtgttgcaaaatt |
481 |
Q |
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| T |
1875760 |
tagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttggtgttgcaaaatt |
1875826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 71 - 481
Target Start/End: Original strand, 1807812 - 1808222
Alignment:
| Q |
71 |
aaagattgttttttcacttccttctgcttttgtaatctttgttttaggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagttt |
170 |
Q |
| |
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||||||| ||||||||||||||||||||||| || ||||||| || || | |||||| || |||| ||| | | || |||||||||||||| ||| |
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| T |
1807812 |
aaagattattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagttgtgcatgaaattaaattt |
1807911 |
T |
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| Q |
171 |
ggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaact |
270 |
Q |
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| T |
1807912 |
ggaccctctaaaatagaagtaatgaaattcactaaagaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaact |
1808011 |
T |
|
| Q |
271 |
ctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttgg |
370 |
Q |
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| T |
1808012 |
cagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttgg |
1808111 |
T |
|
| Q |
371 |
ttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttggt |
470 |
Q |
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|| |||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
1808112 |
ttcttggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggaggaaggagtggagggtgtgttgcacttcttggt |
1808211 |
T |
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| Q |
471 |
gttgcaaaatt |
481 |
Q |
| |
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|||||||||| |
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| T |
1808212 |
tttgcaaaatt |
1808222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 62 - 471
Target Start/End: Complemental strand, 25798409 - 25798000
Alignment:
| Q |
62 |
tagagtgaaaaagattgttttttcacttccttctgcttttgtaatctttgttttaggtgttattttggcattcataaaaaggcctaatgtggtgcatgaa |
161 |
Q |
| |
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|||| ||| ||||||| ||||||||||||||||||| |||||| ||||||| || || || |||||| || |||| || | | | || || ||||| |
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| T |
25798409 |
tagattgagaaagattattttttcacttccttctgcatttgtagtctttgtgttggggattgttttggtttttataagaaaacatgaagttgtcaatgaa |
25798310 |
T |
|
| Q |
162 |
attaagtttggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaa |
261 |
Q |
| |
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||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| ||| ||| |
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| T |
25798309 |
attaaatttggaccaacttcaatagaattggtgaaattcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccattgtcaa |
25798210 |
T |
|
| Q |
262 |
tcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaa |
361 |
Q |
| |
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| ||||||||||| ||||||||||||||||| |||| ||| | ||||| |||||||| |||||||| |||||| |||||||||||||||| | ||||| |
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| T |
25798209 |
ttttgaactctgtcatagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacttcaatttcagtgacagttggactaatgaa |
25798110 |
T |
|
| Q |
362 |
tttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtgtggca |
461 |
Q |
| |
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|||| | ||||||||||||||| ||||| |||| |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
25798109 |
tttgatcggttgttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaatttggtggaagaagtggagggtgtgtggca |
25798010 |
T |
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| Q |
462 |
cttcttggtg |
471 |
Q |
| |
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|||||||||| |
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| T |
25798009 |
cttcttggtg |
25798000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 69 - 481
Target Start/End: Complemental strand, 49993559 - 49993147
Alignment:
| Q |
69 |
aaaaagattgttttttcacttccttctgcttttgtaatctttgttttaggtgttattttggcattcataaaaaggcctaatgtggtgcatgaaattaagt |
168 |
Q |
| |
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|||||||||||||||||||| |||||||||||| || | |||||||| ||||| ||||||| || |||| ||||||||||||| | ||||||||||| | |
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| T |
49993559 |
aaaaagattgttttttcactaccttctgcttttatagtatttgttttgggtgtgattttgggttttataagaaggcctaatgtgatacatgaaattaaat |
49993460 |
T |
|
| Q |
169 |
ttggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttcctttgacaatcttgaa |
268 |
Q |
| |
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||||||| ||| ||||| | |||||||| |||||||||| ||||| |||||||||| || ||||| ||||| ||||| || ||| |||| ||||| |
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| T |
49993459 |
ttggaccttctaatatagagttagtgaaattttctaaacatgcatggaaacaaggttttataaagggtactattccacaactacccttgtcaattttgaa |
49993360 |
T |
|
| Q |
269 |
ctctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggtt |
368 |
Q |
| |
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||| |||||||||||||| || | || ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||| | | |
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| T |
49993359 |
ctcggtgatagctgtttgcaaactatcctctgatttatttccaaccaaggacttttcagtaacttcactttcagtgacagttgggttaatgaatcttttg |
49993260 |
T |
|
| Q |
369 |
ggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttg |
468 |
Q |
| |
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||| ||||||||||||| ||||||| || ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
49993259 |
ggtggttggtttggtgctatgccatgctgtcatggtgctggaggattagcaggacagtataaatttggtgggaggagtggagggtgtgtggcaattcttg |
49993160 |
T |
|
| Q |
469 |
gtgttgcaaaatt |
481 |
Q |
| |
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||| ||||||||| |
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| T |
49993159 |
gtgctgcaaaatt |
49993147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 448
Target Start/End: Original strand, 2862147 - 2862258
Alignment:
| Q |
337 |
tttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttgg |
436 |
Q |
| |
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||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | ||||||||| ||||||||| | || || ||||||| ||||| |
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| T |
2862147 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
2862246 |
T |
|
| Q |
437 |
tggaaggagtgg |
448 |
Q |
| |
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|| |||||||| |
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| T |
2862247 |
aggtaggagtgg |
2862258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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