View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9961_high_9 (Length: 452)

Name: NF9961_high_9
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9961_high_9
NF9961_high_9
[»] chr2 (2 HSPs)
chr2 (69-438)||(4419913-4420282)
chr2 (144-245)||(4417909-4418010)
[»] chr1 (11 HSPs)
chr1 (72-208)||(30629519-30629655)
chr1 (77-208)||(30623888-30624019)
chr1 (69-119)||(40444682-40444732)
chr1 (87-197)||(30641730-30641840)
chr1 (147-205)||(30689730-30689788)
chr1 (143-205)||(30698616-30698678)
chr1 (147-205)||(30718773-30718831)
chr1 (72-115)||(18652894-18652937)
chr1 (147-205)||(30671835-30671893)
chr1 (147-205)||(30710499-30710557)
chr1 (135-208)||(18709026-18709099)
[»] chr3 (1 HSPs)
chr3 (150-207)||(33469977-33470034)
[»] chr7 (4 HSPs)
chr7 (72-128)||(38809648-38809704)
chr7 (72-197)||(38822597-38822722)
chr7 (154-196)||(38830756-38830798)
chr7 (74-208)||(38862397-38862531)
[»] chr5 (1 HSPs)
chr5 (148-207)||(25986001-25986060)
[»] chr4 (2 HSPs)
chr4 (150-214)||(34648874-34648938)
chr4 (149-206)||(49385786-49385843)
[»] chr6 (1 HSPs)
chr6 (143-207)||(4038752-4038816)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 69 - 438
Target Start/End: Complemental strand, 4420282 - 4419913
Alignment:
Q  69 cattatagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcgtcaaagaaaggttcaagagtttggcttggtacatttgata 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4420282 cattatagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcatcaaagaaaggttcaagagtttggcttggtacatttgata 4420183  T
Q  169 cagctgaacaagctgctttagcttatgataaagctgctttgagaattagaggttcaaaagcatgtcttaatttcccaattgagagtgttgcaaatacaaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4420182 cagctgaacaagctgctttagcttatgataaagctgctttgagaattagaggttcaaaagcatgtcttaatttcccaattgagagtgttgcaaatacaaa 4420083  T
Q  269 tgctttaggatatggtaagaaaggaattattgatgttacaaagagagaaagtttattggattcaaggaagagaggattaagggatagaggagaatttgtt 368  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4420082 tactttaggatatggtaagaaaggaattgttgatgttacaaagagagaaagtttattggattcaaggaagagaggattaagggatagaggagaatttgtt 4419983  T
Q  369 gatgtgatgaatattgaagaacctgcaaacaaaaagatggcagtgttggaattggaagacatgttagaaa 438  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4419982 gatgtgatgaatattgaagaaactgcaaacaaaaagatggcagtgttggaattggaagacatgttagaaa 4419913  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 4417909 - 4418010
Alignment:
Q  144 agagtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgctttgagaattagaggttcaaaagcatgtcttaatttcc 243  Q
    ||||| |||||||| |||||  | ||||||||| |||||||| | |||||||||| ||||||||| | ||| ||||||||||| || |  ||||||||||    
T  4417909 agagtatggcttggaacattccaaacagctgaagaagctgctatggcttatgatagagctgctttcaaaatgagaggttcaaaggctttgcttaatttcc 4418008  T
Q  244 ca 245  Q
    ||    
T  4418009 ca 4418010  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 30629655 - 30629519
Alignment:
Q  72 tatagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcgtcaaagaaaggttcaagagtttggcttggtacatttgatacag 171  Q
    ||||||||||| |||||||| |||||||||||||  ||||| ||||| ||||| ||  | |  || |||   ||||||||| ||||||||||||||||||    
T  30629655 tatagaggagttaggagaagaccatggggaaaattcgcagcggaaataagagactcaactagaaatggtgttagagtttggattggtacatttgatacag 30629556  T
Q  172 ctgaacaagctgctttagcttatgataaagctgcttt 208  Q
    |||||  ||| ||||||||||||||| |||| |||||    
T  30629555 ctgaagcagcagctttagcttatgatcaagcagcttt 30629519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 30624019 - 30623888
Alignment:
Q  77 aggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcgtcaaagaaaggttcaagagtttggcttggtacatttgatacagctgaa 176  Q
    |||||| || ||||| |||||||||||||  ||||| ||||| ||||| ||  |||  ||||||   ||||||||| |||||||||||||||||||||||    
T  30624019 aggagttagaagaagaccatggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgttagagtttggattggtacatttgatacagctgaa 30623920  T
Q  177 caagctgctttagcttatgataaagctgcttt 208  Q
       |||||||||||||||||| |||| |||||    
T  30623919 gctgctgctttagcttatgatcaagcagcttt 30623888  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 40444732 - 40444682
Alignment:
Q  69 cattatagaggagtaaggagaaggccatggggaaaatatgcagctgaaatt 119  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||    
T  40444732 cattacagaggagtaaggagaaggccatggggaaaatatgctgcagaaatt 40444682  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 30641730 - 30641840
Alignment:
Q  87 agaaggccatggggaaaatatgcagctgaaattagagattcgtcaaagaaaggttcaagagtttggcttggtacatttgatacagctgaacaagctgctt 186  Q
    ||||| ||||||||||||| |||||| |||||| | ||  |  ||| ||||||  ||||| | |||||||| ||||||||||| ||||||||||||||      
T  30641730 agaagaccatggggaaaatttgcagcagaaattcgtgacccaacaaggaaagggacaagaatatggcttggaacatttgatactgctgaacaagctgcaa 30641829  T
Q  187 tagcttatgat 197  Q
     ||||||||||    
T  30641830 gagcttatgat 30641840  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 30689788 - 30689730
Alignment:
Q  147 gtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgc 205  Q
    ||||||||||| ||||||||||  |||||| | |||||||||||||||||| |||||||    
T  30689788 gtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgc 30689730  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 30698678 - 30698616
Alignment:
Q  143 aagagtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgc 205  Q
    |||||||||||| || ||||||||||  |||||| | |||||||||||||||||| |||||||    
T  30698678 aagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgc 30698616  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 30718831 - 30718773
Alignment:
Q  147 gtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgc 205  Q
    ||||||||||| ||||||||||  |||||| | |||||||||||||||||| |||||||    
T  30718831 gtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgc 30718773  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 18652894 - 18652937
Alignment:
Q  72 tatagaggagtaaggagaaggccatggggaaaatatgcagctga 115  Q
    |||||||| |||||||||||||||||||| |||| |||||||||    
T  18652894 tatagaggtgtaaggagaaggccatgggggaaatttgcagctga 18652937  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 30671893 - 30671835
Alignment:
Q  147 gtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgc 205  Q
    ||||||||||| |||||||| |  |||||| | |||||||||||||||||| |||||||    
T  30671893 gtttggcttggaacatttgacagtgctgaagatgctgctttagcttatgatcaagctgc 30671835  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 30710557 - 30710499
Alignment:
Q  147 gtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgc 205  Q
    |||||||| || ||||||||||  |||||| | |||||||||||||||||| |||||||    
T  30710557 gtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgc 30710499  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 18709099 - 18709026
Alignment:
Q  135 aaaggttcaagagtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgcttt 208  Q
    ||||| |||||||| |||||||| || |||||||||||   | |||||||   |||||||||||||||||||||    
T  18709099 aaaggatcaagagtatggcttggaacctttgatacagccatagaagctgcaaaagcttatgataaagctgcttt 18709026  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 33469977 - 33470034
Alignment:
Q  150 tggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgctt 207  Q
    ||||||||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||    
T  33469977 tggcttggtacttttgacacagctgaagaagcagctttggcttatgataaagctgctt 33470034  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 38809648 - 38809704
Alignment:
Q  72 tatagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcg 128  Q
    |||||||||||||||| ||||||||||||||||| |||||| || ||| ||||||||    
T  38809648 tatagaggagtaaggataaggccatggggaaaatgtgcagcagagattcgagattcg 38809704  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 38822597 - 38822722
Alignment:
Q  72 tatagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcgtcaaagaaaggttcaagagtttggcttggtacatttgatacag 171  Q
    ||||||||||| |||| ||||||||||||||||| ||| || || ||| |||||||| | | | | ||| |  |||||||||||||||||||| | || |    
T  38822597 tatagaggagtgaggataaggccatggggaaaatttgctgcagagattcgagattcggctaggcatggtgctcgagtttggcttggtacatttaacactg 38822696  T
Q  172 ctgaacaagctgctttagcttatgat 197  Q
    ||||  |||||||   ||||||||||    
T  38822697 ctgaggaagctgcaagagcttatgat 38822722  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 38830756 - 38830798
Alignment:
Q  154 ttggtacatttgatacagctgaacaagctgctttagcttatga 196  Q
    |||| ||||||||||||||||||  ||||||||||||||||||    
T  38830756 ttggaacatttgatacagctgaagcagctgctttagcttatga 38830798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 38862397 - 38862531
Alignment:
Q  74 tagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcgtcaaagaaaggttcaagagtttggcttggtacatttgatacagct 173  Q
    |||||||||||| |  |||||||||||||||| ||| || || || ||||||||  |||  ||||||   ||||| ||| |||| ||||| || || ||     
T  38862397 tagaggagtaagaactaggccatggggaaaatttgccgcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggcc 38862496  T
Q  174 gaacaagctgctttagcttatgataaagctgcttt 208  Q
    |||  ||||||||||||||||||| |||| |||||    
T  38862497 gaagcagctgctttagcttatgatcaagcagcttt 38862531  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 25986001 - 25986060
Alignment:
Q  148 tttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgctt 207  Q
    ||||||||||||| ||||| || |||||| |||||||||| |||||||||| ||||||||    
T  25986001 tttggcttggtacttttgacactgctgaagaagctgctttggcttatgatagagctgctt 25986060  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 34648938 - 34648874
Alignment:
Q  150 tggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgctttgagaat 214  Q
    ||||||||||||||| | ||||||||| | |||||  | |||||||||||||||||||| |||||    
T  34648938 tggcttggtacatttcaaacagctgaagaggctgcaattgcttatgataaagctgctttcagaat 34648874  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 49385786 - 49385843
Alignment:
Q  149 ttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgct 206  Q
    |||||||||||| |||||||| ||| || |||||||| | |||||||||| |||||||    
T  49385786 ttggcttggtacttttgatactgctcaagaagctgctcttgcttatgatagagctgct 49385843  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 4038752 - 4038816
Alignment:
Q  143 aagagtttggcttggtacatttgatacagctgaacaagctgctttagcttatgataaagctgctt 207  Q
    |||||||||| | || || ||||||||||||||| ||||||||  |||||||||| | |||||||    
T  4038752 aagagtttggttaggaacttttgatacagctgaagaagctgctagagcttatgatgaggctgctt 4038816  T

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