View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_12 (Length: 441)
Name: NF9961_low_12
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 32058686 - 32059106
Alignment:
| Q |
17 |
ataacttaatatgagagtttgttaaattgagagaacaatactttatattactacccatgattactccaaactaaattgaggcccgcgcaactagaataat |
116 |
Q |
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| T |
32058686 |
ataacttaatatgagagtttgttaaattgagagaacaatactttatattactacccatgattactccaaactaaattgaggcccgcgcaactagaataat |
32058785 |
T |
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| Q |
117 |
aaaatcgtaagatagttttcttatgggaacattaaaagggattactagttactactcaaactacaatat--accttgcatatttatgtaatcatctatta |
214 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32058786 |
aaaatggtaagatagttttcttatgggaacattaaaagggattactagttactactcaaactacaatatataccttgcatatttatgtaatcatctatta |
32058885 |
T |
|
| Q |
215 |
gttttttaacggttcttaatattgaaatcattgaaatttctcttcctctagagattggtaaaaacaatatcacacgcttactcacaaacagagaaattgc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32058886 |
gttttttaacggttcttaatattgaaatcattgaaatttctcttcctctagagattggtaaaaacaatatcacacgcttactcacaaacagagaaattgc |
32058985 |
T |
|
| Q |
315 |
aatgttcaaacaaattaatatatagaaggattgagaacacaaaaaagttatagaatgcttttatatgcactccaattgcataaagtcgccagccctgtgc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32058986 |
aatgttcaaacaaattaatatatagaaggattgagaacacaaaaaagttatagaatgcttttatatgcactccaattgcataaagttgccagccctgtgc |
32059085 |
T |
|
| Q |
415 |
aagtgcaacaatgtcctttgc |
435 |
Q |
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| T |
32059086 |
aagtgcaacaatgtcctttgc |
32059106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 30729603 - 30729718
Alignment:
| Q |
163 |
agttactactcaaactacaatataccttgcatatttatgtaatcatctattagttttttaacggttcttaatattgaaatcattgaaatttctcttcctc |
262 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| ||||| || |
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| T |
30729603 |
agttactactcaaactacaacataccttgtatatttatgtaatcatatagtagtttcataacggttcttaatattgaaatcattgaaatttatcttcatc |
30729702 |
T |
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| Q |
263 |
tagagattggtaaaaa |
278 |
Q |
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|| || |||| ||||| |
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| T |
30729703 |
taaagtttggaaaaaa |
30729718 |
T |
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