View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_13 (Length: 437)
Name: NF9961_low_13
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 2446132 - 2446543
Alignment:
| Q |
19 |
ttctgacctgcttgtcaaacattatcttactcacacaatcaatgtgtgttcatgcaggttatgggtgtttgccctgatgagatcacaatggtttcggttt |
118 |
Q |
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| T |
2446132 |
ttctgacctgcttgtcaaacattatcttactcacacaatcaatgtgtgttcatgcaggttatgggtgtttgccctgatgagatcacaatggtttcggttt |
2446231 |
T |
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| Q |
119 |
tgtctgcatgtgctgatttgggggcacttgagcttggaaaatgggtggaatcatatgttgagaagaaaaatatcccaaaatctgtggaactctgtaacgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446232 |
tgtctgcatgtgctgatttgggggcacttgagcttggaaaatgggtggaatcatatgttgagaagaaaaatatcccaaaatctgtggaactctgtaacgc |
2446331 |
T |
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| Q |
219 |
actgatagacatgtttgcaaagtgtggcaatgttgacaaagctatcaaattgttcagacaaatggactcacgcaccatagtttcatggacttcagtaatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446332 |
actgatagacatgtttgcaaagtgtggcaatgttgacaaagctatcaaattgttcagacaaatggactcacgcaccatagtttcatggacttcagtaatt |
2446431 |
T |
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| Q |
319 |
gctggtctcgcgatgcatggtcgtggtttagacgccgtttctctatttgatgaaatggttgaaaatgggataacacctgatgatgttgctttcattgggg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446432 |
gctggtctcgcgatgcatggtcgtggtttagacgccgtttctctatttgatgaaatggttgaaaatgggataacacctgatgatgttgctttcattgggg |
2446531 |
T |
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| Q |
419 |
tgctctctgctt |
430 |
Q |
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| T |
2446532 |
tgctctctgctt |
2446543 |
T |
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