View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_14 (Length: 433)
Name: NF9961_low_14
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_14 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 33456613 - 33456765
Alignment:
| Q |
11 |
tcttcttcttctttaggtgttgttaatgtgttgaggaattcaaaatatgttaaagctgctcaagaattgttggaagagttttgtagtgttggaaggggtc |
110 |
Q |
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| T |
33456613 |
tcttcttcttctttaggtgttgttaatgtgttgaggaattcaaaatatgttaaagctgctcaagaattgttggaagagttttgcagtgttggaaggggtc |
33456712 |
T |
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| Q |
111 |
aattcaagaagaataaatttagtagacaattatcaaaccctaattcaaatcaa |
163 |
Q |
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| T |
33456713 |
aattcaagaagaataaatttagtagacaattatcaaaccctaattcaaatcaa |
33456765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 33456800 - 33456905
Alignment:
| Q |
198 |
cttcttcatcttcttcaaaagatgtttcacctttgtcacctgcgaataggattgagcatcaaagaaggaaggtcaaacttctaaccatgcttgacgaggc |
297 |
Q |
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| T |
33456800 |
cttcttcatcttcttcaaaagatgtttcacctttgtcacctgctgataggattgagcatcaaagaaggaaggtcaaacttctaaccatgcttgacgaggc |
33456899 |
T |
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| Q |
298 |
atgtaa |
303 |
Q |
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| T |
33456900 |
atgtaa |
33456905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 15755152 - 15755233
Alignment:
| Q |
344 |
tgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagattttcatcttttctcaattcatctc |
425 |
Q |
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| T |
15755152 |
tgagaagagtttgttacgattcagttagctttcaccattgatgcgtgaacttcaagcttttcatcttttctcaattcatctc |
15755233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 419
Target Start/End: Complemental strand, 6289 - 6214
Alignment:
| Q |
344 |
tgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagattttcatcttttctcaatt |
419 |
Q |
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| T |
6289 |
tgagaagagtttgttacgattcagttagcttccgccattgatgtgtgagcttcaatcttttcatgctttctcaatt |
6214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 7066191 - 7066115
Alignment:
| Q |
227 |
cctttgtcacctgcgaataggattgagcatcaaagaaggaaggtcaaacttctaaccatgcttgacgaggcatgtaa |
303 |
Q |
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| T |
7066191 |
cctttgtcagctgctgataggattgaacatcaaagaaggaaggtcaagcttctttccatgcttgatgaggcatgtaa |
7066115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 7066368 - 7066304
Alignment:
| Q |
47 |
aattcaaaatatgttaaagctgctcaagaattgttggaagagttttgtagtgttggaaggggtca |
111 |
Q |
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| T |
7066368 |
aattcaaaatatatgaaacctactcaagaattgcttcaagagttttgcagtgttggaaggggtca |
7066304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 17117910 - 17117978
Alignment:
| Q |
344 |
tgagaagagtttgttacgattcagttagcttctgccattgatgcgtgaacttcaagatt-ttcatcttt |
411 |
Q |
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| T |
17117910 |
tgagaggagtttgttacgattcagttagcttccgccattgatgcatgatcctcaagcttcttcatcttt |
17117978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 13140209 - 13140166
Alignment:
| Q |
344 |
tgagaagagtttgttacgattcagttagcttctgccattgatgc |
387 |
Q |
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| T |
13140209 |
tgagaggagttacttacgattcagttagcttctgccattgatgc |
13140166 |
T |
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