View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_low_15 (Length: 432)
Name: NF9961_low_15
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 25669790 - 25669392
Alignment:
| Q |
20 |
cgtttgcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttc |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25669790 |
cgtttgcctacacgagttcgtttacaggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatttggctcacatgtttc |
25669691 |
T |
|
| Q |
120 |
ttacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25669690 |
ttacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtctt |
25669591 |
T |
|
| Q |
220 |
tttgttgttataacgtttcacgccagagctggatgcttgtatggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatgatgtt |
319 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25669590 |
tttgttgttataacgtttcacgccagaactggatgcttgtatggctagtttgctttggagtttctggaagcaccactacctcaaagtgtaggatgatgtt |
25669491 |
T |
|
| Q |
320 |
atataaatagttgctcatgtagttgatacaactcatcatttgttggaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaattaaccc |
418 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25669490 |
acataaatagctgcgcatgtagttgatacaactcatcatttgttggacgagtggacacttgcaaacgtaaccaccaacgatgctcgtcaaaattaaccc |
25669392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 426
Target Start/End: Complemental strand, 25828261 - 25827857
Alignment:
| Q |
21 |
gtttgcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttct |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||||||| |||||||||| |||||||||||||| | |
|
|
| T |
25828261 |
gtttgcctacacgagttcgtttacaggataaaggtgtccaatgccctttagagtgtgttggttgtgtttcttatgattaggatatggctcacatgttttt |
25828162 |
T |
|
| Q |
121 |
tacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtcttt |
220 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||| ||||||||||||| | ||||||||||||||||| | ||||| |
|
|
| T |
25828161 |
tacttgcccatttacaatgtaagtttggattatggctgtcctttggaacgacattcaatagattgtcagtgatagtagtttggaagcaaaatcgatcttt |
25828062 |
T |
|
| Q |
221 |
ttgttgttataacgtttcacgccagagctggatgcttgtatggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatgatgtta |
320 |
Q |
| |
|
||||| ||| |||||||||||||||| |||| | ||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25828061 |
ttgtttttacaacgtttcacgccagaactggctacttgtatggctagtttgtttcggagtttacggaagca-cactacctcaaagtgtaggatgatgtta |
25827963 |
T |
|
| Q |
321 |
tataaatagttgctcatgtagttgatacaactcatcatttgttggaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaattaacccta |
420 |
Q |
| |
|
| | ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
25827962 |
aaaagatagttgctcaagtagttgataaagctcatcatttgttggaggagtggacacttgcaaacgcaaccaccaccgatgctcgtcaaaattagcccca |
25827863 |
T |
|
| Q |
421 |
tgctac |
426 |
Q |
| |
|
|||||| |
|
|
| T |
25827862 |
tgctac |
25827857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 21 - 414
Target Start/End: Complemental strand, 25472484 - 25472105
Alignment:
| Q |
21 |
gtttgcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttct |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||||||||| |||||||| |||||||| ||| | | |
|
|
| T |
25472484 |
gtttgcctacacgagttcgtttacaggataaaggtgtctaatgcccta----gtgtgttagttgtgtttcttctaattaggatttggctcacttgtcttt |
25472389 |
T |
|
| Q |
121 |
tacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtcttt |
220 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| | |||||||||| |||||||| ||||||||| |||||||||||||| | ||||| |
|
|
| T |
25472388 |
tacttgcccatttacattgcaagtttgg-ttctggctggcctttggaacaacattcaatagattgtcaatgacactagtttggc---------gatcttt |
25472299 |
T |
|
| Q |
221 |
ttgttgttataacgtttcacgccagagctggatgcttgtatggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatgatgtta |
320 |
Q |
| |
|
|||| ||| || ||||||| ||||| |||| | |||||||||||||||||||||||||||| | |||||||| || || |||| ||||| ||||||||| |
|
|
| T |
25472298 |
ttgtaattacaatgtttcacaccagaactggctacttgtatggctagtttgctttggagtttatcgaagcaccgctgccacaaaatgtagaatgatgtta |
25472199 |
T |
|
| Q |
321 |
tataaatagttgctcatgtagttgatacaactcatcatttgttggaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaatta |
414 |
Q |
| |
|
| | ||| ||||||| ||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25472198 |
caaagataattgctcaagtagttggtaaagctcatcatttgttgtaggagtggacacttgcaaacgcaaccaccaacgatgctcgtcaaaatta |
25472105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 25429792 - 25429567
Alignment:
| Q |
21 |
gtttgcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttct |
120 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||||||| ||| | | |
|
|
| T |
25429792 |
gtttgcctacaaaagttcgtttagaggataaaggtgtccaatgccctacaaagtgtgttagttgtgtttcttctgattaagatttggctcacgtgtcttt |
25429693 |
T |
|
| Q |
121 |
tacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtcttt |
220 |
Q |
| |
|
||||| |||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||| ||||| ||||||||||||| | || || | ||||| |
|
|
| T |
25429692 |
tacttcgccatttgcaatccaagtttggattgaggctgacatttggaacgacattcaacagactgtcactgacactagtttgacaacagaagcgatcttt |
25429593 |
T |
|
| Q |
221 |
ttgttgttataacgtttcacgccaga |
246 |
Q |
| |
|
||||||||| ||||||||||| |||| |
|
|
| T |
25429592 |
ttgttgttacaacgtttcacggcaga |
25429567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 24889120 - 24889345
Alignment:
| Q |
21 |
gtttgcctacacgagttcgtttataggataaaggtgtccaaggccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttct |
120 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||| ||| | | |
|
|
| T |
24889120 |
gtttgcctacaaaagttcgtttagaggataaaggtgtccaataccctacaaagtgtgttagttgtgtttcttctgattaagatttggctcacgtgtcttt |
24889219 |
T |
|
| Q |
121 |
tacttgcccatttacaatgcaagtttggattctggccgacctttggaacgacattcaacagattgtcagtgacactagtttggaagcaaaattggtcttt |
220 |
Q |
| |
|
||||| |||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||| ||||| ||||||||||||| | || || | ||||| |
|
|
| T |
24889220 |
tacttcgccatttgcaatccaagtttggattgaggctgacatttggaacgacattcaacagactgtcactgacactagtttgacaacagaagcgatcttt |
24889319 |
T |
|
| Q |
221 |
ttgttgttataacgtttcacgccaga |
246 |
Q |
| |
|
|||||||| ||||||||||| |||| |
|
|
| T |
24889320 |
atgttgttacaacgtttcacggcaga |
24889345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 216 - 404
Target Start/End: Original strand, 25983908 - 25984096
Alignment:
| Q |
216 |
tctttttgttgttataacgtttcacgccagagctggatgcttgtatggctagtttgctttggagtttttggaagcaccactacctcaaagtgtaggatga |
315 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||| |||| | |||| ||| ||| |||||||||| |||||| ||||| |||||||||||| ||||| |
|
|
| T |
25983908 |
tctttttgttattacaacgtttcacgcctgagctggctgctcgcatggttagcttgttttggagtttatggaagtaccacaacctcaaagtgtgagatga |
25984007 |
T |
|
| Q |
316 |
tgttatataaatagttgctcatgtagttgatacaactcatcatttgttggaggagtggacacttgcaaacgcaaccaccaacgatgctc |
404 |
Q |
| |
|
||||| | | | | |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
25984008 |
tgttacagagacaactgctcaagtagttgatacaactcatcatttgttggaagagtggacatttgcaaacgcagccaccaacgttgctc |
25984096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 41837399 - 41837475
Alignment:
| Q |
63 |
gccctataaagtgtgttagttgtgtttcttctgattaggatctggctcacatgtttcttacttgcccatttacaatg |
139 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||| ||| |||| || ||| ||||||| |||||||||||||| ||||| |
|
|
| T |
41837399 |
gccctacaaattgtgttagttgtgattctttcgatgaggacttgactcgcatgttttttacttgcccatttgcaatg |
41837475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University