View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9961_low_16 (Length: 422)

Name: NF9961_low_16
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9961_low_16
NF9961_low_16
[»] chr1 (4 HSPs)
chr1 (19-412)||(48064844-48065235)
chr1 (216-259)||(50692137-50692180)
chr1 (328-387)||(52561668-52561727)
chr1 (323-387)||(27520281-27520345)
[»] chr7 (3 HSPs)
chr7 (323-390)||(9210778-9210845)
chr7 (323-387)||(36136908-36136972)
chr7 (323-387)||(36239870-36239934)
[»] chr5 (2 HSPs)
chr5 (323-387)||(15168915-15168979)
chr5 (324-387)||(28026-28089)
[»] chr4 (3 HSPs)
chr4 (323-387)||(51421874-51421938)
chr4 (328-387)||(55809069-55809128)
chr4 (323-387)||(55237980-55238044)
[»] chr2 (2 HSPs)
chr2 (328-412)||(4682256-4682340)
chr2 (216-253)||(27503752-27503789)
[»] chr3 (4 HSPs)
chr3 (324-379)||(15296059-15296114)
chr3 (328-387)||(19676160-19676219)
chr3 (328-386)||(49042081-49042139)
chr3 (323-388)||(45289165-45289230)
[»] chr8 (1 HSPs)
chr8 (323-387)||(29520793-29520857)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 48064844 - 48065235
Alignment:
Q  19 aaacatacgtttagtgcttgactttctctccnnnnnnnnnngagtgatagtgcttgagttatttatttgtt-gtgggtttgtgttttgaattactataac 117  Q
    |||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  48064844 aaacatacgtttagtgcttgactttctctccttttttttttgagtgatagtgcttgagttatttatttttttgtgggtttgtgttttgaattactataac 48064943  T
Q  118 aatgatcaaatattattccattaaatgagtttggttagttggatcgaattatgtcatatttcatcccaaataaattatttgttgggttctttgactatct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||       ||||| ||||||||||    
T  48064944 aatgatcaaatattattccattaaatgagtttggttagttggatcgaattatgtcatatttcatccca---aaatta-------ggttcattgactatct 48065033  T
Q  218 aatgtatgtagtatatattatagatcaaatacattacgtatttaataaacttacaag-------nnnnnnnnnnnnnnnataattgtgaccgaaaggagt 310  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||| |||| ||||    
T  48065034 aatatatgtactatatattatagatcaaatacattacgtatttaataaacttacaagtttttttatttttttattttttataattgtgactgaaaagagt 48065133  T
Q  311 gatgttttatattaaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttttccttgatcatgatctatctcctt 410  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||    
T  48065134 aatgttttatattaaatcatatttggatccaattcatcaacctcgaaatttttcctaacaatttctcctatagttttcctagatcatgatctatctcttt 48065233  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 50692137 - 50692180
Alignment:
Q  216 ctaatgtatgtagtatatattatagatcaaatacattacgtatt 259  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  50692137 ctaatgtatttggtatatattatagatcaaatacattacgtatt 50692180  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 52561668 - 52561727
Alignment:
Q  328 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    ||||||||||||||| |||| |||||| |||| ||||| |||| ||||||||||||||||    
T  52561668 catatttggatccaactcattaacctctaaatctttcctaacagtttctcttatagtttt 52561727  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 27520281 - 27520345
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    |||||||||||||||||||  |||| || ||| |||||||| | || | ||||||||||||||||    
T  27520281 taaatcatatttggatccagctcattaatctctaaattttttctaatagtttctcttatagtttt 27520345  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 9210778 - 9210845
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttttcct 390  Q
    |||| ||||||||||||||| |||| |||||| |||||||||| || | |||||||||||||||||||    
T  9210778 taaaccatatttggatccaactcattaacctctaaatttttcctaaaagtttctcttatagttttcct 9210845  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 36136972 - 36136908
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    |||| |||||||||||||||||||| ||| || |||| |||||||| | ||||||||||||||||    
T  36136972 taaaccatatttggatccaattcattaacatctaaatctttccaaatagtttctcttatagtttt 36136908  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 36239870 - 36239934
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    |||| ||||||||||||||| || | || ||| |||||||||| || | ||||||||||||||||    
T  36239870 taaagcatatttggatccaactcgttaatctctaaatttttcctaatagtttctcttatagtttt 36239934  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 15168979 - 15168915
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    |||| ||||| ||||||||| | || |||||| |||||||||| |||| ||||||||||||||||    
T  15168979 taaaccatatctggatccaacttattaacctctaaatttttcctaacagtttctcttatagtttt 15168915  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 28089 - 28026
Alignment:
Q  324 aaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    ||||||||||||||||||| | || |||||| |||| ||||| || | ||||||||||||||||    
T  28089 aaatcatatttggatccaacttattaacctctaaatctttcctaatagtttctcttatagtttt 28026  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 51421938 - 51421874
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    |||| ||| |||||||||||||||| |||||| |||| ||||| || | ||||||||||||||||    
T  51421938 taaaccatttttggatccaattcattaacctctaaatctttcctaatagtttctcttatagtttt 51421874  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 55809069 - 55809128
Alignment:
Q  328 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    ||||| ||||||||| |||| |||||| |||| ||||| |||| ||||||||||||||||    
T  55809069 catatctggatccaactcattaacctctaaatctttcctaacagtttctcttatagtttt 55809128  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 55237980 - 55238044
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    |||||||||||||||| ||| |||| ||| ||||||| | ||| || ||||||||||||| ||||    
T  55237980 taaatcatatttggattcaactcattaacatcgaaatatatcctaataatttctcttataatttt 55238044  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 412
Target Start/End: Original strand, 4682256 - 4682340
Alignment:
Q  328 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttttccttgatcatgatctatctcctttg 412  Q
    ||||||||||||||| |||| |||||| |||| ||||   | |||||||||||||||||| || |||| ||||||| ||| ||||    
T  4682256 catatttggatccaactcattaacctctaaatctttcatgaaaatttctcttatagtttttctagatcttgatctacctcttttg 4682340  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 27503789 - 27503752
Alignment:
Q  216 ctaatgtatgtagtatatattatagatcaaatacatta 253  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  27503789 ctaatgtatgtagtatatattatatatcaaatatatta 27503752  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 379
Target Start/End: Complemental strand, 15296114 - 15296059
Alignment:
Q  324 aaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctctt 379  Q
    |||||||||||||||||||||||| |||||| |||| ||||| || | ||||||||    
T  15296114 aaatcatatttggatccaattcattaacctctaaatctttcctaatagtttctctt 15296059  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 19676160 - 19676219
Alignment:
Q  328 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    ||||||||||||||| |||| |||||| |||||||||| || | ||||||||| ||||||    
T  19676160 catatttggatccaactcattaacctctaaatttttcctaatagtttctcttacagtttt 19676219  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 386
Target Start/End: Complemental strand, 49042139 - 49042081
Alignment:
Q  328 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttt 386  Q
    ||||||||||||||| |||| |||||| |||| ||||| || | |||||||||||||||    
T  49042139 catatttggatccaactcattaacctctaaatctttcctaatagtttctcttatagttt 49042081  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 45289165 - 45289230
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttttc 388  Q
    |||| ||||||||||||||| |||| || ||| |||| ||||| || | |||||||||||||||||    
T  45289165 taaaccatatttggatccaactcattaatctctaaatctttcctaatagtttctcttatagttttc 45289230  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 29520857 - 29520793
Alignment:
Q  323 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 387  Q
    |||| ||||||||||||||| |||| || ||| ||||  |||| |||| ||||||||||||||||    
T  29520857 taaaccatatttggatccaactcattaatctctaaatcgttcctaacagtttctcttatagtttt 29520793  T

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