View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_low_18 (Length: 397)
Name: NF9961_low_18
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 3307818 - 3307447
Alignment:
| Q |
20 |
ccttaagcctccaggttccatactcaattgaataacttgtaacccttatgccttcaggataaccaatgaagacacaatcgagagctctaacttcaaacct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3307818 |
ccttaagcctccaggttccatactcaattcaataacttgtaacccttatgccttctggataaccaatgaagacacaatcgagagctctaacttcaaacct |
3307719 |
T |
|
| Q |
120 |
ccacaggtgtcttgaaatttattcatattgacggacatatcttgatcatgttgtagtactcacagcttctcttctaaaaactcttgggcaacccaactcc |
219 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3307718 |
ccataggtgtcttgaaatttattcatattgacggacatatcttgatcatgttgtagtactcacagcttctcttctaaaaactcttgggcaacccagctcc |
3307619 |
T |
|
| Q |
220 |
aaaaatttgcatctaatatggttcaaaatgatccattcatgcattcacctatgccaatttgtaataggaatttaaggttgtcaaaaatcctaagacaaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3307618 |
aaaaatttgcatctaatatggttcaaaatgatccattcattcattcacctatgccaatttgtaataggaatttaaggttgtcaaaaatcctaagacaaat |
3307519 |
T |
|
| Q |
320 |
tgaactcataacttgaaccttgcactttgtgttatttctaagtgaacgagtccaccttctttcaacaccaaa |
391 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3307518 |
taaactcataacttgaaccttgcactctgtgttatttctaagtgaacgagtccaccttctttcaactccaaa |
3307447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University