View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9961_low_19 (Length: 396)

Name: NF9961_low_19
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9961_low_19
NF9961_low_19
[»] chr7 (7 HSPs)
chr7 (14-227)||(47927036-47927249)
chr7 (232-385)||(17835032-17835185)
chr7 (231-385)||(12611861-12612015)
chr7 (232-385)||(12599187-12599340)
chr7 (232-385)||(25248880-25249034)
chr7 (18-134)||(48108176-48108292)
chr7 (232-280)||(23792806-23792854)
[»] chr2 (7 HSPs)
chr2 (232-385)||(4108905-4109059)
chr2 (234-385)||(37349714-37349866)
chr2 (232-366)||(13968898-13969032)
chr2 (231-341)||(45109480-45109591)
chr2 (241-341)||(45107771-45107872)
chr2 (231-311)||(19038248-19038329)
chr2 (232-276)||(3470826-3470871)
[»] chr4 (5 HSPs)
chr4 (232-385)||(31954715-31954869)
chr4 (232-380)||(24826571-24826720)
chr4 (232-385)||(40137793-40137945)
chr4 (232-362)||(25243404-25243534)
chr4 (231-263)||(24557109-24557141)
[»] chr3 (7 HSPs)
chr3 (231-385)||(17441702-17441857)
chr3 (234-385)||(17471947-17472099)
chr3 (232-385)||(14486370-14486524)
chr3 (232-385)||(20127589-20127743)
chr3 (232-281)||(8820460-8820509)
chr3 (234-295)||(23459301-23459362)
chr3 (232-311)||(20000660-20000740)
[»] chr5 (3 HSPs)
chr5 (1-227)||(39411342-39411556)
chr5 (232-366)||(22860609-22860743)
chr5 (232-285)||(38472250-38472303)
[»] chr1 (5 HSPs)
chr1 (232-341)||(7351735-7351845)
chr1 (232-311)||(3400578-3400658)
chr1 (232-309)||(11801376-11801453)
chr1 (232-280)||(13117389-13117437)
chr1 (229-271)||(7644721-7644763)
[»] scaffold0227 (1 HSPs)
scaffold0227 (324-385)||(20641-20702)
[»] chr6 (3 HSPs)
chr6 (232-334)||(16990190-16990293)
chr6 (231-263)||(34213413-34213445)
chr6 (232-263)||(34220015-34220046)
[»] chr8 (2 HSPs)
chr8 (232-313)||(38809600-38809682)
chr8 (234-274)||(26568682-26568722)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 47927249 - 47927036
Alignment:
Q  14 tgaaagagatatcaaattcttgaatggaatgaagtcacaattggttggattgcaaacaatacaacattcaagacatagatgttttagagcagaagcaatg 113  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |     
T  47927249 tgaaagatatgtcaaattcttgaatggaataaagtcacaattggttggattgcaaacaatacaacattcaagacgtagatgttttagagcagaagcagta 47927150  T
Q  114 gtctccgaaaataagtcaaaggaaaatttgtaacgtttgcttggatctgggtgagcatatggttgagatggataaggctctccaagaaagagtaaatcga 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||  || |||| ||||||||||||||||||||||||||||||||    
T  47927149 gtctccgaaaataagtcaaaggcaaatttgtaacgtttgcttggatctgggtgaggattagggtgagctggataaggctctccaagaaagagtaaatcga 47927050  T
Q  214 tccttccaactccc 227  Q
    || |||||||||||    
T  47927049 tcattccaactccc 47927036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 232 - 385
Target Start/End: Complemental strand, 17835185 - 17835032
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttacaaagtaactgaataat 331  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17835185 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacgtcctaggtggagtctcaagagcactttacaaagtaactgaataat 17835086  T
Q  332 acaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    || |||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  17835085 accatgtttttcactctctgggatctgtcccatcacatctaaacctcccccttt 17835032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 231 - 385
Target Start/End: Original strand, 12611861 - 12612015
Alignment:
Q  231 atgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttacaaagtaactgaataa 330  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||    
T  12611861 atgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacgtcctaggtgaagtctcaatagcactttacaaagtaactggataa 12611960  T
Q  331 tacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12611961 taccatgtttttcactctctgggatctgtcccatcacatctaaacttcccccttt 12612015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 12599187 - 12599340
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttacaaagtaactgaataat 331  Q
    ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  12599187 tgttcacgtatctaaacacaagttagttacaacaggtgagctgctcagtaaaacgtcctaggtggagtctcaatagcactttacaaagtaactggataat 12599286  T
Q  332 acaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12599287 accatgtttttcactctctgggatctgtcccatcacatctaaacttcccccttt 12599340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 25248880 - 25249034
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaataa 330  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| |||| ||||||| ||||||    
T  25248880 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacgtccaaggtggagtctcaagagcactctacagaagtaacagaataa 25248979  T
Q  331 tacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25248980 tacaatattttttactatctgggatctgtcccatcacatctaaacttcccccttt 25249034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 48108176 - 48108292
Alignment:
Q  18 agagatatcaaattcttgaatggaatgaagtcacaattggttggattgcaaacaatacaacattcaagacatagatgttttagagcagaagcaatggtct 117  Q
    |||||| ||||||| || |||||| ||||||| |||||||| |||| | |||||||||||  |||||||||||  || |||||||  |||||| ||||||    
T  48108176 agagatttcaaattttttaatggagtgaagtcgcaattggtgggatggaaaacaatacaattttcaagacatatgtggtttagagttgaagcattggtct 48108275  T
Q  118 ccgaaaataagtcaaag 134  Q
    || |||||||| |||||    
T  48108276 ccaaaaataaggcaaag 48108292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 23792854 - 23792806
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagt 280  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  23792854 tgttcacgtatgtaaacacaagataattacaacatgtgagttgctcagt 23792806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 4108905 - 4109059
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaataa 330  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||||||||||||||||||||| |||| ||||||||||||||    
T  4108905 tgtttacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgtccaaggtggagtctcaagagcactctacagaagtaactgaataa 4109004  T
Q  331 tacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4109005 tacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 4109059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 37349866 - 37349714
Alignment:
Q  234 ttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaataata 332  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| | || |||||| |||||||||    
T  37349866 ttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgtcctaggtggagtctcaagagcactcttcagaagtaaatgaataata 37349767  T
Q  333 caatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  37349766 caatgtttttcattatcaggaatctgtcccatcacatctaaacttcccccttt 37349714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 366
Target Start/End: Complemental strand, 13969032 - 13968898
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact-ttacaaagtaactgaataa 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||| |||  || |||||||||||    
T  13969032 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcaatgaaacgtcttaggaggagtctcaagagcactcttaagaaataactgaataa 13968933  T
Q  331 tacaatgtttttcactatctgggatctgtcccatca 366  Q
    |||| |  |||||||||||||| |||||||||||||    
T  13968932 tacact-attttcactatctggaatctgtcccatca 13968898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 45109480 - 45109591
Alignment:
Q  231 atgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact-ttacaaagtaactgaata 329  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| || |||||||||||||||||||||| |||  |||||| ||||||    
T  45109480 atgttcacgtatgtaaacacaagataattacaacaggtgagctgctcagtgaaacatcctaggtggagtctcaagagcactcttaagaagtaaatgaata 45109579  T
Q  330 atacaatgtttt 341  Q
    ||||| ||||||    
T  45109580 atacattgtttt 45109591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 45107771 - 45107872
Alignment:
Q  241 atgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact-ttacaaagtaactgaataatacaatgtt 339  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||| || |||||||||||||||||||||| |||  |||||| ||||||||||| ||||    
T  45107771 atgtaaacacaagataattacaacaggtgagctgctcagtgaaacatcctaggtggagtctcaagagcactattaagaagtaaatgaataatacattgtt 45107870  T
Q  340 tt 341  Q
    ||    
T  45107871 tt 45107872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 19038248 - 19038329
Alignment:
Q  231 atgttcacgtatgtaaacacaagttaa-ttacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact 311  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||| | ||| ||| |||||||| |  ||||||||||    
T  19038248 atgttcacgtatgtaaacacaagttaatttacaacaggtgagctgctcaatgaaatgtcctaggtggaattccaagagcact 19038329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 3470871 - 3470826
Alignment:
Q  232 tgttcacgtatgtaaacacaagtt-aattacaacaagtgagctgct 276  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||    
T  3470871 tgttcacgtatgtaaacacaagttaaattacaataagtgagctgct 3470826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 232 - 385
Target Start/End: Complemental strand, 31954869 - 31954715
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaataa 330  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||  ||||| |||||||    
T  31954869 tgtttacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgtcctaggtggagtctcaagagcactctacaggagtaaatgaataa 31954770  T
Q  331 tacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31954769 tacaatgttttttactatctgggatctgtcccatcacatctaaacttcccccttt 31954715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 232 - 380
Target Start/End: Complemental strand, 24826720 - 24826571
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaataa 330  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | |||| || ||||||||||||||||| |||| |||| |||||| |||||||    
T  24826720 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcaatgaaacatcctaggtggagtctcaagatcactctacagaagtaaatgaataa 24826621  T
Q  331 tacaatgtttttcactatctgggatctgtcccatcacatctaaacttccc 380  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  24826620 tacaatgtttttcactatctggaatctctcccatcacatctaaacttccc 24826571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 385
Target Start/End: Complemental strand, 40137945 - 40137793
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaataa 330  Q
    ||||||||||||||||||  |||||||||||||| |||||||||| ||| |||| || |||||||||||||||||| ||| | || |||||| |||||||    
T  40137945 tgttcacgtatgtaaaca--agttaattacaacaggtgagctgcttagtgaaacatcctaggtggagtctcaagagaactcttcagaagtaaatgaataa 40137848  T
Q  331 tacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    |||||||||||||||| | ||| |||||||||||||||| | |||||||||||||    
T  40137847 tacaatgtttttcactctttggaatctgtcccatcacatatgaacttcccccttt 40137793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 362
Target Start/End: Complemental strand, 25243534 - 25243404
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact-ttacaaagtaactgaataa 330  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| |||| || |||||||||||||||||||||| | |  |||||| |||||||    
T  25243534 tgttcacgtatgtaaacacaaattaattacaacaggtgagctgctcagtgaaacatcctaggtggagtctcaagagcactctcaagaagtaaatgaataa 25243435  T
Q  331 tacaatgtttttcactatctgggatctgtccc 362  Q
    |||| ||||||| ||||||||| || ||||||    
T  25243434 tacactgttttt-actatctggaatttgtccc 25243404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 24557141 - 24557109
Alignment:
Q  231 atgttcacgtatgtaaacacaagttaattacaa 263  Q
    ||||||||||||||||||| |||||||||||||    
T  24557141 atgttcacgtatgtaaacataagttaattacaa 24557109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 231 - 385
Target Start/End: Complemental strand, 17441857 - 17441702
Alignment:
Q  231 atgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaata 329  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||| | || |||||| ||||||    
T  17441857 atgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgtcctaggtggagtctcgagagcactcttcagaagtaaatgaata 17441758  T
Q  330 atacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  17441757 atacaatgtttttcactatctggaatctgtcccatcacatctaaactttccccttt 17441702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 17472099 - 17471947
Alignment:
Q  234 ttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaataata 332  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| || || |||||||||| |||||||| | || |||||| |||||||||    
T  17472099 ttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacatcctacgtggagtctcgagagcactcttcagaagtaaatgaataata 17472000  T
Q  333 caatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  17471999 caatgtttttcactatctgaaatcagtcccatcacatctaaacttcccccttt 17471947  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 14486370 - 14486524
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcactttaca-aagtaactgaataa 330  Q
    |||||| ||||||||||| |||||||||||||||  ||||||| ||||| ||| ||  |||||||||||||||||||||| | || |||||| |||||||    
T  14486370 tgttcatgtatgtaaacataagttaattacaacagatgagctgttcagtgaaatgttttaggtggagtctcaagagcactcttcagaagtaaatgaataa 14486469  T
Q  331 tacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    || | |||||||||| |||||| ||||||||||| | ||||||||||||||||||    
T  14486470 tatactgtttttcaccatctggaatctgtcccataagatctaaacttcccccttt 14486524  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 385
Target Start/End: Original strand, 20127589 - 20127743
Alignment:
Q  232 tgttcacgtatgtaaacacaagtt-aattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact-ttacaaagtaactgaata 329  Q
    |||||| ||||||||||||||||| ||||||||||  ||||||||||||| |||| ||||||||||||||||||||||||| |||  || ||| ||||||    
T  20127589 tgttcatgtatgtaaacacaagtttaattacaacagatgagctgctcagtgaaacatcataggtggagtctcaagagcactcttaagaaataaatgaata 20127688  T
Q  330 atacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    ||||| || |||||||||||| | || ||||||||| ||||||||  |||||||||    
T  20127689 atacattg-ttttcactatctagaatttgtcccatcccatctaaatgtcccccttt 20127743  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 8820460 - 8820509
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagta 281  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  8820460 tgttcacgtatgaaaacacaagttaattacaacaggtgagctgctcagta 8820509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 23459301 - 23459362
Alignment:
Q  234 ttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtg 295  Q
    |||||||||||||||||||||||||||||| | ||||| |||| ||| ||| ||| ||||||    
T  23459301 ttcacgtatgtaaacacaagttaattacaataggtgagttgctgagtgaaatgtcttaggtg 23459362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 20000740 - 20000660
Alignment:
Q  232 tgttcacgtatgtaaacacaagtt-aattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact 311  Q
    |||||||||||||||||||||||| |||||||| |  ||||||| || || ||| ||| |||||||| | |||||||||||    
T  20000740 tgttcacgtatgtaaacacaagttaaattacaatagatgagctgttcggtgaaatgtcttaggtggaatttcaagagcact 20000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39411556 - 39411342
Alignment:
Q  1 ctacttttcttaatgaaagagatatcaaattcttgaatggaatgaagtcacaattggttggattgcaaacaatacaacattcaagacatagatgttttag 100  Q
    |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  39411556 ctacttttcttagtgaaagtgatatcaaattcttgaatggaataaagtcacaattggttggattgtaaacaatacaacattcaagacgaagatgttttag 39411457  T
Q  101 agcagaagcaatggtctccgaaaataagtcaaaggaaaatttgtaacgtttgcttggatctgggtgagcatatggttgagatggataaggctctccaaga 200  Q
    |||| ||||| | | |||||||||||||||||||| ||||||||||  ||| ||||||   | ||||||            | |||||||||||||||||    
T  39411456 agcataagcattaggctccgaaaataagtcaaaggcaaatttgtaatattttcttggactagagtgagc------------tagataaggctctccaaga 39411369  T
Q  201 aagagtaaatcgatccttccaactccc 227  Q
    |||||||||||||| ||||||||||||    
T  39411368 aagagtaaatcgattcttccaactccc 39411342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 366
Target Start/End: Complemental strand, 22860743 - 22860609
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact-ttacaaagtaactgaataa 330  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||| || |||||||||||| |||||| |||| |||||| |||| ||    
T  22860743 tgttcacgtatgtaaacataagttaattacaacaggtgagctgcttagtgaaacgtcctacgtggagtctcaaaagcactcttacgaagtaaatgaacaa 22860644  T
Q  331 tacaatgtttttcactatctgggatctgtcccatca 366  Q
    |||| || |||||||| | | | |||||||||||||    
T  22860643 tacattg-ttttcactgttttgaatctgtcccatca 22860609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 38472303 - 38472250
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaac 285  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  38472303 tgttcacgtatgtaaacacaagttaattacaacagatgagctgctcagtgaaac 38472250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 341
Target Start/End: Original strand, 7351735 - 7351845
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact-ttacaaagtaactgaataa 330  Q
    |||||||||||||||||||||| ||||||||||| ||||||| |||||| |||| || |||||||||||||||||||||| ||| ||||||| |||||||    
T  7351735 tgttcacgtatgtaaacacaagataattacaacaggtgagctactcagtgaaacatcttaggtggagtctcaagagcactcttaaaaagtaaatgaataa 7351834  T
Q  331 tacaatgtttt 341  Q
    |||| ||||||    
T  7351835 tacattgtttt 7351845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 3400658 - 3400578
Alignment:
Q  232 tgttcacgtatgtaaacacaagtt-aattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact 311  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||| || ||| ||| |||||||| | |||||||||||    
T  3400658 tgttcacgtatgtaaacacaagttaaattacaataggtgagctgctcggtgaaatgtcctaggtggaatttcaagagcact 3400578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 11801453 - 11801376
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagca 309  Q
    ||||||||||||| ||||||||||||||| |||| |||||| | ||||| ||| ||| |||||||| | |||||||||    
T  11801453 tgttcacgtatgtgaacacaagttaattataacaggtgagcggttcagtgaaatgtcttaggtggaatttcaagagca 11801376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 13117437 - 13117389
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagt 280  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  13117437 tgttcacgtatgtaaacacaagttaattacaccatatgagctgctcagt 13117389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 7644763 - 7644721
Alignment:
Q  229 ttatgttcacgtatgtaaacacaagttaattacaacaagtgag 271  Q
    |||| |||||||||||||||||||||||||||||||| |||||    
T  7644763 ttatattcacgtatgtaaacacaagttaattacaacatgtgag 7644721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 20702 - 20641
Alignment:
Q  324 tgaataatacaatgtttttcactatctgggatctgtcccatcacatctaaacttcccccttt 385  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  20702 tgaataatacaatgtttttccctctctggaatctgtcccatcacatctaaacttcccccttt 20641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 16990190 - 16990293
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcact-ttacaaagtaactgaataa 330  Q
    ||||| ||||||||||||||||| |||||| ||| ||||||||||  || |||| || |||||||||||||||||||||| |||  |||||| |||||||    
T  16990190 tgttcgcgtatgtaaacacaagtcaattactacaggtgagctgctatgtgaaacatcttaggtggagtctcaagagcactcttaagaagtaaatgaataa 16990289  T
Q  331 taca 334  Q
    ||||    
T  16990290 taca 16990293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 34213413 - 34213445
Alignment:
Q  231 atgttcacgtatgtaaacacaagttaattacaa 263  Q
    |||||||||||||||||||||||||||||||||    
T  34213413 atgttcacgtatgtaaacacaagttaattacaa 34213445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 263
Target Start/End: Original strand, 34220015 - 34220046
Alignment:
Q  232 tgttcacgtatgtaaacacaagttaattacaa 263  Q
    ||||||||||||||||||||||||||||||||    
T  34220015 tgttcacgtatgtaaacacaagttaattacaa 34220046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 38809600 - 38809682
Alignment:
Q  232 tgttcacgtatgtaaacacaagtt-aattacaacaagtgagctgctcagtaaaacgtcataggtggagtctcaagagcacttt 313  Q
    |||||||||||||||||||||||| |||| ||||| ||||||||||| || ||| ||| |||||||| |  ||||||||||||    
T  38809600 tgttcacgtatgtaaacacaagttaaatttcaacaggtgagctgctcggtgaaatgtcctaggtggaattccaagagcacttt 38809682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 26568722 - 26568682
Alignment:
Q  234 ttcacgtatgtaaacacaagttaattacaacaagtgagctg 274  Q
    |||| |||||||||||||||||||||||||||  |||||||    
T  26568722 ttcatgtatgtaaacacaagttaattacaacagatgagctg 26568682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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