View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_20 (Length: 378)
Name: NF9961_low_20
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 6284387 - 6284662
Alignment:
| Q |
24 |
aaatatctaataggagtttggatcattattaatgtgtatgtctatagtctaaggggtagtaattatgtttcagtgatgtggtaaaataaaa-tatcaata |
122 |
Q |
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| T |
6284387 |
aaatatctaataggagtttggatcattattaatgtgtatgtctatagtctaaggggtagtaattatgtttcagtgatgtggtaaaataaaaatatcaata |
6284486 |
T |
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| Q |
123 |
atcaatcctaattttgattctaaaagtatggaggtcgttgttgcatgtcacacaccttatatacaagtaaaaatattgagagaacaactaaagatttctc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6284487 |
atcaatcctaattttgattctaaaagtatggaggtcgttgttgcatgtcacacaccttatatacaagtaaaaatattgagagaacaactaaagatttctc |
6284586 |
T |
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| Q |
223 |
ttgatgaatagcataattgattatagggtctacggattaaatttagttctaacatttttctctaaaaattatattc |
298 |
Q |
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| T |
6284587 |
ttgatgaataacataattgattatagggtctacggattaaatttagttctaacatttttctctaaaaattatattc |
6284662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 6285050 - 6285116
Alignment:
| Q |
306 |
aacaccacagtgacacctttaatcatactgaattatatcgttttctcaaattattattgatgtccat |
372 |
Q |
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| T |
6285050 |
aacaccacagtgacacctataatcatattgaattatattgttttctcaaattattattggtgtccat |
6285116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 36386219 - 36386265
Alignment:
| Q |
318 |
acacctttaatcatactgaattatatcgttttctcaaattattattg |
364 |
Q |
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| T |
36386219 |
acacctttaattacactgaattatgtccttttctcaaattattattg |
36386265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 23128683 - 23128720
Alignment:
| Q |
332 |
actgaattatatcgttttctcaaattattattgatgtc |
369 |
Q |
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| T |
23128683 |
actgaattatatggttttctcaaattattattggtgtc |
23128720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 41099765 - 41099797
Alignment:
| Q |
334 |
tgaattatatcgttttctcaaattattattgat |
366 |
Q |
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| T |
41099765 |
tgaattatatcattttctcaaattattattgat |
41099797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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