View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9961_low_24 (Length: 370)

Name: NF9961_low_24

Description: NF9961

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9961_low_24

[»] chr5 (4 HSPs)

[»] chr7 (1 HSPs)

Alignment Details

Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 218; E-Value: 1e-120

Query Start/End: Original strand, 57 - 370

Target Start/End: Complemental strand, 15618829 - 15618522

Alignment:

Q	57	aagactaacatctttcccccctcaccaaaacccgagccttgtatttatagttcctctagccctaaaaaacctggagaccaagnnnnnnnnnnnnnnnnta	156	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	15618829	aagactaacatctttcccccctcaccaaaacccgagccttgtatttatagttcctctagccctaaaaaacctggagaccaagaaaacaaaaacaaaaata	15618730	T

Q	157	cttgtctacgtcacaatccatttcctccatgccacgagataggtagtggttggacaccctaccattcttcgagttgcgcatcaagaatcgttcctccgtg	256	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15618729	cttgtctacgtcacaatccatttcctccatgccacgagataggcagtggttggacaccctaccattcttcgagttgcgcgtcaagaatcgttcctccgtg	15618630	T

Q	257	tcgtgaggtaggcagaacctaggctacaaattaaatggtaagacatatacaaaaagaatagcaaataagaaagaatttacatacactagacagggttatg	356	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15618629	tcgtgaggtaggcagaacctaggctcc-----aaatggtaaggcatatac-aaaagaatagctaataagaaagaatttacatacactagacagggttatg	15618536	T

Q	357	ttaaatcacaagtt	370	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15618535	ttaaatcacaagtt	15618522	T

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Target: chr5; HSP #2

Raw Score: 41; E-Value: 0.00000000000004

Query Start/End: Original strand, 14 - 58

Target Start/End: Complemental strand, 15618894 - 15618850

Alignment:

Q	14	tctagcctatgaatccctccctaaaaggcacaaacgctttcttaa	58	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15618894	tctagcttatgaatccctccctaaaaggcacaaacgctttcttaa	15618850	T

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Target: chr5; HSP #3

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 321 - 370

Target Start/End: Original strand, 1601250 - 1601299

Alignment:

Q	321	ataagaaagaatttacatacactagacagggttatgttaaatcacaagtt	370	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1601250	ataagaaggaatttccatacactaggcagggttatgttaaatcacaagtt	1601299	T

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Target: chr5; HSP #4

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 321 - 370

Target Start/End: Complemental strand, 8527807 - 8527758

Alignment:

Q	321	ataagaaagaatttacatacactagacagggttatgttaaatcacaagtt	370	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8527807	ataagaaggaatttccatacactaggcagggttatgttaaatcacaagtt	8527758	T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 329 - 370

Target Start/End: Original strand, 48362895 - 48362936

Alignment:

Q	329	gaatttacatacactagacagggttatgttaaatcacaagtt	370	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48362895	gaatttccatacactgggcagggttatgttaaatcacaagtt	48362936	T

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