View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_25 (Length: 366)
Name: NF9961_low_25
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 14722726 - 14723050
Alignment:
| Q |
7 |
atatcatcctcatttttgtgtactaacatgtggaccttcccaactactagaatcgtattccacttttctggtgatgttggatgtgagattgattattctt |
106 |
Q |
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| T |
14722726 |
atatcatcctcatttttgtgtactaacatgtggaccttcccaactactagaatcgtattccacttttctggtgatgttggatgtgagattgattattctt |
14722825 |
T |
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| Q |
107 |
tggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgattattcaactgcatccttaataattaat |
206 |
Q |
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| T |
14722826 |
tggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgtttattcaactgcatccttaataattaat |
14722925 |
T |
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| Q |
207 |
atcattaagctcttccttgctacgcatccaaatgctgctatcgctcatcctccaaaaccagaaccacacgatccatctgcatctctggagtttgtaattt |
306 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14722926 |
atcactaagctcttccttgctacgcatccaaatgctgctatcgctcatcctccaaaaccggaaccacacgatccatctgcatctctggagtttgtaattt |
14723025 |
T |
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| Q |
307 |
gcaatgcatatgaagccatgtgact |
331 |
Q |
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| T |
14723026 |
gcaatgcatatgaagccatgtgact |
14723050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 24634358 - 24634208
Alignment:
| Q |
46 |
ccaactactagaatcgtattccacttttctggtgatgttggatgtgagattgattattctttggattctactccctaagttctggaattggtatattatc |
145 |
Q |
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| T |
24634358 |
ccaactactatgatcatattccacttttctggtgttattggatgtgagacac----ttctttggattctactccctaagttctggaattggtatatcatc |
24634263 |
T |
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| Q |
146 |
aaccttttccttttattcgttactttgctatgattattcaactgcatccttaata |
200 |
Q |
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| T |
24634262 |
aatctattccttttaatggttatttcattatgtttcttcaactgcatccttaata |
24634208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 24679977 - 24679885
Alignment:
| Q |
102 |
ttctttggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgattattcaactgcatcc |
194 |
Q |
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| T |
24679977 |
ttctttggattctactccctgaattctggaattggtatattatcaacttattccttttaatggttacttctttatgtttcttcaactgcatcc |
24679885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 24656410 - 24656352
Alignment:
| Q |
102 |
ttctttggattctactccctaagttctggaattggtatattatcaaccttttcctttta |
160 |
Q |
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| T |
24656410 |
ttctttggattctgctccctgatttctggaattggtatatcatcaacttattcctttta |
24656352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 24676917 - 24676864
Alignment:
| Q |
107 |
tggattctactccctaagttctggaattggtatattatcaaccttttcctttta |
160 |
Q |
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| T |
24676917 |
tggattctactccctgacttctggaattggtatatcatcaatctatccctttta |
24676864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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