View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9961_low_26 (Length: 364)

Name: NF9961_low_26
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9961_low_26
NF9961_low_26
[»] chr1 (6 HSPs)
chr1 (16-348)||(6449886-6450214)
chr1 (101-166)||(6727980-6728045)
chr1 (18-126)||(30519135-30519243)
chr1 (18-87)||(12626926-12626995)
chr1 (19-68)||(27900786-27900835)
chr1 (19-123)||(34826963-34827068)
[»] chr5 (4 HSPs)
chr5 (21-125)||(18970153-18970257)
chr5 (45-87)||(34033373-34033415)
chr5 (19-79)||(26675148-26675208)
chr5 (19-79)||(26946756-26946816)
[»] chr8 (3 HSPs)
chr8 (30-143)||(21145449-21145563)
chr8 (112-167)||(7603949-7604004)
chr8 (26-129)||(10028522-10028626)
[»] chr6 (3 HSPs)
chr6 (101-155)||(24834944-24834998)
chr6 (101-166)||(9436537-9436602)
chr6 (101-142)||(10219618-10219659)
[»] chr4 (2 HSPs)
chr4 (101-142)||(5979414-5979455)
chr4 (101-142)||(11358529-11358570)
[»] scaffold0687 (1 HSPs)
scaffold0687 (112-167)||(1633-1688)
[»] chr3 (1 HSPs)
chr3 (101-155)||(38989875-38989929)
[»] chr2 (3 HSPs)
chr2 (100-142)||(23359425-23359467)
chr2 (101-129)||(8001988-8002016)
chr2 (19-87)||(13242552-13242620)
[»] chr7 (2 HSPs)
chr7 (26-142)||(24352383-24352499)
chr7 (22-129)||(5362338-5362446)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 6450214 - 6449886
Alignment:
Q  16 attatgacaataaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgacgtattagcttagcattttaacgtcagag 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6450214 attatgacaataaataagtacttatgtggattgatttaacagtaaatgagtatattgatggactgatatgacgtattagcttagcattttaacgtcagag 6450115  T
Q  116 actattttgactaaagtagtgcacaattgaaaattattttagaattttgata-attatattgatgaactatcgtggctactagttacacattcagtacca 214  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||||  ||||||||| |||||    
T  6450114 actattttgactgaagtagtgcacaattgaaaactattttagaattttgatacattatattgatgaaatattgtggctactag--acacattcactacca 6450017  T
Q  215 aaagtgaatatttacccatataactaactatcaaagtataaccaagagtgcttggatgagatgataatgaatctactctagcttaactagatgtttgacg 314  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  6450016 aaagtg---atttacccatataactaactatcaaagtataaccaagagtgcttgaatgagatgataatgaatcttctctagcttaactagatgtttgacg 6449920  T
Q  315 ttcgaattcagccttgagaatgaagcaatgttaa 348  Q
    || |||||||||||||||||||||||||||||||    
T  6449919 tttgaattcagccttgagaatgaagcaatgttaa 6449886  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 6727980 - 6728045
Alignment:
Q  101 attttaacgtcagagactattttgactaaagtagtgcacaattgaaaattattttagaattttgat 166  Q
    ||||||| |||| ||||||||||||||||  ||||||||||| ||| | |||||| ||||||||||    
T  6727980 attttaaagtcaaagactattttgactaacatagtgcacaatggaagactattttggaattttgat 6728045  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 30519243 - 30519135
Alignment:
Q  18 tatgacaataaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgac-gtattagcttagcattttaacgtcagaga 116  Q
    |||||||||||||||||| ||||   ||||||||| ||| ||| |||||||||||| ||| || |||||| |||||| |  | ||||||||||  |||||    
T  30519243 tatgacaataaataagtatttatagagattgatatgaca-taagtaagtatattgagggattggtatgactgtattaacagaacattttaacgcgagaga 30519145  T
Q  117 ctattttgac 126  Q
    ||||||||||    
T  30519144 ctattttgac 30519135  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 12626926 - 12626995
Alignment:
Q  18 tatgacaataaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgac 87  Q
    |||||||||||| ||||| ||||   |||| |||| | ||||||||||||||||||  ||||||||||||    
T  12626926 tatgacaataaacaagtatttataaagattaatatgatagtaaataagtatattgagcgactgatatgac 12626995  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27900786 - 27900835
Alignment:
Q  19 atgacaataaataagtacttatgtggattgatataacagtaaataagtat 68  Q
    |||||||||| |||||||||||  |||||||||| ||| |||||||||||    
T  27900786 atgacaataagtaagtacttataaggattgatatgacaataaataagtat 27900835  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 34826963 - 34827068
Alignment:
Q  19 atgacaataaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgac-gtattagcttagcattttaacgtcagagac 117  Q
    |||||||||| |||||||||||  | | |||||| ||| ||||||||||||||||  |||| |||||||  ||||| |  | ||||||||| ||| ||||    
T  34826963 atgacaataagtaagtacttataagtactgatatgacaataaataagtatattgaatgactaatatgacaatattaacgaaacattttaacatcaaagac 34827062  T
Q  118 tatttt 123  Q
    ||||||    
T  34827063 tatttt 34827068  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 18970153 - 18970257
Alignment:
Q  21 gacaataaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgac-gtattagcttagcattttaacgtcagagacta 119  Q
    |||||||| |||||||||||  |||||||||| | |||||||||||||||||| ||||||||||||| ||||||    | ||||||||||| ||||||||    
T  18970153 gacaataagtaagtacttata-ggattgatatgatagtaaataagtatattgagggactgatatgacagtattaatggaacattttaacgtgagagacta 18970251  T
Q  120 ttttga 125  Q
    ||||||    
T  18970252 ttttga 18970257  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 34033373 - 34033415
Alignment:
Q  45 attgatataacagtaaataagtatattgatggactgatatgac 87  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  34033373 attgatataacagtaagtaagtatattgatggactcatatgac 34033415  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 26675208 - 26675148
Alignment:
Q  19 atgacaataaataagtacttatgtggattgatataacagtaaataagtatattgatggact 79  Q
    |||||||||||||| |||||||  | | |||||| ||| |||||||||||||||| |||||    
T  26675208 atgacaataaataaatacttataagaactgatatgacaataaataagtatattgaaggact 26675148  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 26946816 - 26946756
Alignment:
Q  19 atgacaataaataagtacttatgtggattgatataacagtaaataagtatattgatggact 79  Q
    |||||||||||||| |||||||  | | |||||| ||| |||||||||||||||| |||||    
T  26946816 atgacaataaataaatacttataagaactgatatgacaataaataagtatattgaaggact 26946756  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 21145563 - 21145449
Alignment:
Q  30 taagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgacg-tattagcttagcattttaacgtcagagactattttgacta 128  Q
    |||||||||||  ||| |||||| ||||||| ||||||||||||  |||| ||||||   ||||| |  | ||||||||||| |||||||||||||||||    
T  21145563 taagtacttataaggactgatatgacagtaagtaagtatattgagagactaatatgataatattaacgaaacattttaacgtaagagactattttgacta 21145464  T
Q  129 aagtagtgcacaatt 143  Q
    |  ||||||||||||    
T  21145463 acatagtgcacaatt 21145449  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 7604004 - 7603949
Alignment:
Q  112 agagactattttgactaaagtagtgcacaattgaaaattattttagaattttgata 167  Q
    ||||||||||||||| || | ||||||||||  |||||||||||| ||||||||||    
T  7604004 agagactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgata 7603949  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 10028522 - 10028626
Alignment:
Q  26 taaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgacg-tattagcttagcattttaacgtcagagactattttg 124  Q
    |||||||||||||||  | |||||||| ||| |||  || |||||| | ||| | |||||||| ||||| |  |||||||||| || |||||||||||||    
T  10028522 taaataagtacttatacgaattgatatgacaataagaaaatatattcaaggattaatatgacgatattaacaaagcattttaaagtaagagactattttg 10028621  T
Q  125 actaa 129  Q
    |||||    
T  10028622 actaa 10028626  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 24834944 - 24834998
Alignment:
Q  101 attttaacgtcagagactattttgactaaagtagtgcacaattgaaaattatttt 155  Q
    |||||||| |||||||||||||||||||| | |||||| ||||||| ||||||||    
T  24834944 attttaacatcagagactattttgactaatgaagtgcataattgaagattatttt 24834998  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 9436602 - 9436537
Alignment:
Q  101 attttaacgtcagagactattttgactaaagtagtgcacaattgaaaattattttagaattttgat 166  Q
    |||||||||||||| || ||||||||||| | ||||||||||| | || ||||||  |||||||||    
T  9436602 attttaacgtcagaaacaattttgactaacgaagtgcacaattaagaactattttgtaattttgat 9436537  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 10219659 - 10219618
Alignment:
Q  101 attttaacgtcagagactattttgactaaagtagtgcacaat 142  Q
    |||||||||||||||||||||||||||||   ||||||||||    
T  10219659 attttaacgtcagagactattttgactaacaaagtgcacaat 10219618  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 5979455 - 5979414
Alignment:
Q  101 attttaacgtcagagactattttgactaaagtagtgcacaat 142  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  5979455 attttaacgtcagagactattttgactaacgaagtgcacaat 5979414  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 11358570 - 11358529
Alignment:
Q  101 attttaacgtcagagactattttgactaaagtagtgcacaat 142  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  11358570 attttaacgtcagagactattttgactaacgaagtgcacaat 11358529  T

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Target: scaffold0687 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 1688 - 1633
Alignment:
Q  112 agagactattttgactaaagtagtgcacaattgaaaattattttagaattttgata 167  Q
    ||||||||||||||| || | ||||||||||  |||||||||||| ||||||||||    
T  1688 agagactattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgata 1633  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 38989875 - 38989929
Alignment:
Q  101 attttaacgtcagagactattttgactaaagtagtgcacaattgaaaattatttt 155  Q
    |||||||||||||||||||||||||| || | ||||||||||  |||| ||||||    
T  38989875 attttaacgtcagagactattttgaccaacgaagtgcacaatcaaaaaatatttt 38989929  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 23359467 - 23359425
Alignment:
Q  100 cattttaacgtcagagactattttgactaaagtagtgcacaat 142  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||    
T  23359467 cattttaacgttagagactattttgactaacgtagtacacaat 23359425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 8002016 - 8001988
Alignment:
Q  101 attttaacgtcagagactattttgactaa 129  Q
    |||||||||||||||||||||||||||||    
T  8002016 attttaacgtcagagactattttgactaa 8001988  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 13242620 - 13242552
Alignment:
Q  19 atgacaataaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgac 87  Q
    ||||||||||||||||||||||  |||||||||| ||| ||| |||  ||||| | ||||| |||||||    
T  13242620 atgacaataaataagtacttataaggattgatatgacaataagtaaccatattaaaggactaatatgac 13242552  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 24352499 - 24352383
Alignment:
Q  26 taaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatgac-gtattagcttagcattttaacgtcagagactattttg 124  Q
    ||||||||||||| |  |||||||||| ||||||| ||||||| || | ||  ||||||||| |||||| | || |||||||||   ||| |||||||||    
T  24352499 taaataagtacttttaaggattgatatgacagtaagtaagtatgtttagggtttgatatgacagtatta-cataacattttaacacgagatactattttg 24352401  T
Q  125 actaaagtagtgcacaat 142  Q
    | ||| ||||||||||||    
T  24352400 attaatgtagtgcacaat 24352383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 5362446 - 5362338
Alignment:
Q  22 acaataaataagtacttatgtggattgatataacagtaaataagtatattgatggactgatatga-cgtattagcttagcattttaacgtcagagactat 120  Q
    ||||||| ||| || ||||  |||||||||| | | |||||||||||||||| ||||| |||||| | ||||| |  || |||||||  |||| ||||||    
T  5362446 acaataagtaaatatttataaggattgatatgataataaataagtatattgaaggactaatatgaccatattaacgaagtattttaatatcagggactat 5362347  T
Q  121 tttgactaa 129  Q
    |||||||||    
T  5362346 tttgactaa 5362338  T

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