View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_27 (Length: 356)
Name: NF9961_low_27
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 40 - 338
Target Start/End: Original strand, 26888099 - 26888398
Alignment:
| Q |
40 |
ttgtgggactaggaacactaagtggcttatgaaatggttgtttacgaatgtgattatttactgacaagttaagtagaaggagatttttcacatatatgtc |
139 |
Q |
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| T |
26888099 |
ttgtgggactgggaacactaagtggcttatgaaatggttgtttacgaatgtgattatttactgacaagttaagtagaaggagatttttcacatatatgtc |
26888198 |
T |
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| Q |
140 |
gatgttattacacaaaacacttgttacaactaacgtttgaaaaatcggataagacattgaaccagtagaaccgatataggtatc-attcaatttcataaa |
238 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26888199 |
gatgttattacacagaacacttgttacaactaacgtttgaaaaatcggataagacattgaaccagtagaaccgatataggtatcaattcaatttcataaa |
26888298 |
T |
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| Q |
239 |
gaaacaaagtcgtacatagtctgctggttatgcattcagtggctgtgtgtgtctgctaattgctaagtgaaagacctaaccataatgttgatggctatat |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
26888299 |
gaaacaaagtcgtacatagtctgctggttatgcattcagtggctgtgtgtgtctgctaattgctaagcgaaagacctaaccataatgttgatagctatat |
26888398 |
T |
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