View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_29 (Length: 310)
Name: NF9961_low_29
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 9090925 - 9090640
Alignment:
| Q |
11 |
cagagagaagttcgcaatagataacactacgtgcagttctatatgcatgcacatacttatttgatgaggataggaaatcttctcagttggttttgtaaaa |
110 |
Q |
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| T |
9090925 |
cagagagaagttcgcaatagataacactacgtgcagttctatatgcatgcacatacttatttggtgaggataggaaatcttctcagttggttttgtaaaa |
9090826 |
T |
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| Q |
111 |
tcagcaacattggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgac |
210 |
Q |
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| T |
9090825 |
tcagcaacattggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgac |
9090726 |
T |
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| Q |
211 |
aataacaatgctaacacttgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaat |
296 |
Q |
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| T |
9090725 |
aataacaatgctaacacttgacaacaacactggtgactggaaacaaatacgaaacaacaatttgaatcaggtaaaaagaatgtaat |
9090640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 253
Target Start/End: Complemental strand, 9095229 - 9095029
Alignment:
| Q |
53 |
atgcatgcacatacttatttgatgaggataggaaatcttctcagttggttttgtaaaatcagcaacattggcaacggtgataccccacttaaatgcaggt |
152 |
Q |
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| T |
9095229 |
atgcatgcgcatacctatttgttgaggataggaaagcttctcaggtggttttgcaaaatcagcaatattggcaatgctgataccccacttaaatgtaggg |
9095130 |
T |
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| Q |
153 |
gcccaaaagtgaactgcacaacaaaagtggtcaattaatggattga-tacaggtttgacaataacaatgctaacacttgacaacaacactggtgactgga |
251 |
Q |
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| T |
9095129 |
gcccaaaagtgaactgcacaaaataagtggtcaatttatacatcgattaca-gcttcacaatgtcaatattaacacttgaaaacaacattggtgactgga |
9095031 |
T |
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| Q |
252 |
aa |
253 |
Q |
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| T |
9095030 |
aa |
9095029 |
T |
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