View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_3 (Length: 783)
Name: NF9961_low_3
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 27 - 638
Target Start/End: Original strand, 5464925 - 5465531
Alignment:
| Q |
27 |
tataaatagttagtttattagattaatatttactcgtttgtccagattaaaatgcataacctccaactcattttcgctttgctcaaaccattgaagttac |
126 |
Q |
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| T |
5464925 |
tataaatagttaatttattagattaatatttactcgtttgtctatattaaaatgcataacttccaactcattttcactttgctcaaacaattgaagttac |
5465024 |
T |
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| Q |
127 |
tcatccctttttccttgacaattaatcaaatcatgccaaatagtcaaaactacaaccatgaaagactaacaaatttcgctacttctaacacctcatcaaa |
226 |
Q |
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| T |
5465025 |
tcatccctttttccttgacaattaatcaaatcatgccaaatagtcaa--ctacaaccatgaaagactaacaaatttcgctacttctaacacctcatcaaa |
5465122 |
T |
|
| Q |
227 |
acttctaacaaacttaaagtgtaaaatgatgacacacaatgcttcttgaaattagctattaggtaaacccaaaacaaagtaaaattgaagactccaagta |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5465123 |
acttctaacaaacttaaagtgtaaaatgatgacacacaatgcttcttgaaattagctattaggtaaacccaaaacaaagtaaaattgaagactcaaagta |
5465222 |
T |
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| Q |
327 |
ctgacttaaaatgttgtaacaaggcttattgttgttatttttcaatccaaaaaccaaaagaaacttatgttgttattttcaatccacactttcatacatt |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465223 |
ctgacttaaaatgttgtaacaaggcttattgttgttatttttcaatccaaaaaccaaaagaaacttatgttgttattttcaatccacactttcatacatt |
5465322 |
T |
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| Q |
427 |
cagatcattggtggtggtgatgcatgacattgcggttgttcaatcaaatagttcacattcacgcgttctgaacatttgcgacaactcattgatgacattg |
526 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |
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| T |
5465323 |
cagatcat---tggtggtgatgcatgacattgcggttgttcaatcaaatagttcacattcacgcgttctgaacatttccgacaactcattgttgactttg |
5465419 |
T |
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| Q |
527 |
ttgttgttcatcaagtcatcgatgttccgaatgcgtgatcacgtggacataatattcgtggtcaactgttaacttcattcctcccataaaaagaggcctg |
626 |
Q |
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| T |
5465420 |
ctgttgttcatcaagtcatcgatgttccgaatgcgtgatcacgtggacataatattcgtggtcaactgttaacttcattcctcccataaaaagaggcctg |
5465519 |
T |
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| Q |
627 |
cctgcccctaac |
638 |
Q |
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| T |
5465520 |
cctgcccctaac |
5465531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 689 - 765
Target Start/End: Original strand, 5465582 - 5465658
Alignment:
| Q |
689 |
acatatgaatctatctaactaactctgtacttattcttcttttgttcacacaatacatagtattgcaaatgcatgat |
765 |
Q |
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| T |
5465582 |
acatatgaatctatctaactaactctgtactaattcttcttttgttcacacaatacatagtattgcaaatgcatgat |
5465658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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