View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_30 (Length: 306)
Name: NF9961_low_30
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 12437867 - 12438001
Alignment:
| Q |
10 |
gcacagacaatcgttaggttcaccttcttccaagctccatcttcacggaggagtcgttaacggtggtgacactatcatcgccgatgaaccaccgaaacct |
109 |
Q |
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| T |
12437867 |
gcacagacaatcgttaggttcaccttcttccaagctccatcttcatggaggagtcgttaacggcggtgacactatcatcgccgatgaaccaccgaaacct |
12437966 |
T |
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| Q |
110 |
caccgtctctcttcacctccttcaccaccgaacaa |
144 |
Q |
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| T |
12437967 |
caccgtctctcttcacctccttcaccaccgaacaa |
12438001 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 12438081 - 12438146
Alignment:
| Q |
224 |
gaactaactcatttcaacggattcactgcattcaaacgctcgaataatcataatctaggtaaaaat |
289 |
Q |
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| T |
12438081 |
gaactaactcatttcaacggattcactgcattcaaacgctcgaataatcataatctaggtaaaaat |
12438146 |
T |
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