View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_low_31 (Length: 290)
Name: NF9961_low_31
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 37823194 - 37823465
Alignment:
| Q |
1 |
agaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
100 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823194 |
agaatcattgtagtaataagagtcacccatgtattgcaaaccaatttggtcgtcactcacattcatcattccttgaaagttcttgatgcatgatgttggc |
37823293 |
T |
|
| Q |
101 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823294 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
37823393 |
T |
|
| Q |
201 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823394 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
37823465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 37401868 - 37401597
Alignment:
| Q |
1 |
agaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
100 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401868 |
agaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
37401769 |
T |
|
| Q |
101 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401768 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
37401669 |
T |
|
| Q |
201 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401668 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
37401597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 37639036 - 37639307
Alignment:
| Q |
1 |
agaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
100 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639036 |
agaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
37639135 |
T |
|
| Q |
101 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639136 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
37639235 |
T |
|
| Q |
201 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639236 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
37639307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 37710823 - 37711065
Alignment:
| Q |
30 |
tgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgttagagac |
129 |
Q |
| |
|
||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37710823 |
tgtattgcagatcaatttttttgtcattcaccttcatcattccttgaaagttcttgatgcatgatgctggcaagggcccactaaaattgttgttagagac |
37710922 |
T |
|
| Q |
130 |
atcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710923 |
atcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggt |
37711022 |
T |
|
| Q |
230 |
agagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37711023 |
agagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
37711065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 37593494 - 37593765
Alignment:
| Q |
1 |
agaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593494 |
agaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
37593593 |
T |
|
| Q |
101 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
200 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37593594 |
aagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttg |
37593693 |
T |
|
| Q |
201 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | |||||||| |
|
|
| T |
37593694 |
atcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgt |
37593765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 37532390 - 37532661
Alignment:
| Q |
1 |
agaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
37532390 |
agaatcattatagtaataacccgcacccttgtattgcaaaccaatttggctgtcattcacattcatcattcctttaaagttcttgatgcatgatattggc |
37532489 |
T |
|
| Q |
101 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37532490 |
aagggcccactaaaattgttgttagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttg |
37532589 |
T |
|
| Q |
201 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | |||||||| |
|
|
| T |
37532590 |
atcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgt |
37532661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 37695885 - 37696156
Alignment:
| Q |
1 |
agaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695885 |
agaatcattatagtaataaccgtcacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
37695984 |
T |
|
| Q |
101 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
200 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37695985 |
aagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttg |
37696084 |
T |
|
| Q |
201 |
atcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | |||||||| |
|
|
| T |
37696085 |
atcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgt |
37696156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 37393723 - 37393476
Alignment:
| Q |
25 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgtta |
124 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |
|
|
| T |
37393723 |
acccatgtattgcaaaccaatttggctgttattcacatccatcattccttgaaagttcttgaagcatgatgttggcaaggggccactaaaattgttacta |
37393624 |
T |
|
| Q |
125 |
gagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaact |
224 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
37393623 |
gagacatcataaattctcaacttaggaaatggatgcttggtgctagaacatgtgattgacccatgaagatgatttgatcgtaaacttagcacctgtaact |
37393524 |
T |
|
| Q |
225 |
ctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
|| |||||||||||||||||| ||||| |||||||| | |||||||| |
|
|
| T |
37393523 |
cttgtagagtttctagccaattgggaaaagtatcctctatgttgttgt |
37393476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 51 - 272
Target Start/End: Original strand, 37702023 - 37702244
Alignment:
| Q |
51 |
tgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttggg |
150 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
37702023 |
tgtcatttacattaatcattccttgaaagttcttgatgcatgatgttggcaaggggccactaaaattgttgttagaggcatcaaaaattctcaacttagg |
37702122 |
T |
|
| Q |
151 |
aaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggtagagtttctagccaatcagga |
250 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
37702123 |
aaatgaatgcttggtgctagaacaagtgattgcaccatgaagatgatttgatcgtaaactcagcacctgtaactctggtaaagtttctagccaattggga |
37702222 |
T |
|
| Q |
251 |
aatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
37702223 |
aatgtatcctctatgttgttgt |
37702244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 37383172 - 37382925
Alignment:
| Q |
25 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgtta |
124 |
Q |
| |
|
|||| |||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
37383172 |
acccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaaattcttgatgcacgatgttggcaagggcccaataaaattgttgtta |
37383073 |
T |
|
| Q |
125 |
gagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaact |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| || |||||||| |||||||| |||||||||| |||||| | ||||||||| | |
|
|
| T |
37383072 |
gagacatcaaaaattctcaacttgggaaatggatgtttggtgctagagcatgtgattgcgccatgaagtttatttgatcttaaactgagcacctgtaatt |
37382973 |
T |
|
| Q |
225 |
ctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
|| |||||||||| ||||||| ||||| |||||||| |||||||||| |
|
|
| T |
37382972 |
cttgtagagtttcaagccaattgggaaaagtatcctctacgttgttgt |
37382925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 272
Target Start/End: Original strand, 37435024 - 37435271
Alignment:
| Q |
25 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgtta |
124 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
37435024 |
acccatgtattgcaaaccaatctggctatcattcacattcatcattccttgaaagttcttgatacatgatgttggcaaggatccactaaaattgttaccg |
37435123 |
T |
|
| Q |
125 |
gagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaact |
224 |
Q |
| |
|
||| ||||||||||| ||||| | ||| | ||| |||||| ||||||||||||||| ||||| ||| |||||||||| |||||| | |||||||||| |
|
|
| T |
37435124 |
aagatgtcaaaaattcttaacttagaaaaaggatggttggtgttagaacaggtgattgaaccattaagtttatttgatcttaaactgagtacctgtaact |
37435223 |
T |
|
| Q |
225 |
ctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
37435224 |
cttgtagagtttctagccaattgggaaatgtatcctctatgttgttgt |
37435271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 37413908 - 37413775
Alignment:
| Q |
128 |
acatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctg |
227 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37413908 |
acataaaatattctcaacttgggaaatgtatgctttgtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttagcacctgtaactctt |
37413809 |
T |
|
| Q |
228 |
gtagagtttctagccaatcaggaaatgtatcctc |
261 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
37413808 |
gtagagtttctagccaattgggaaatgtatcctc |
37413775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37428342 - 37428548
Alignment:
| Q |
1 |
agaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggc |
100 |
Q |
| |
|
||||||||||||||||| || |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| ||| |
|
|
| T |
37428342 |
agaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtcggc |
37428441 |
T |
|
| Q |
101 |
aagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttg |
200 |
Q |
| |
|
||||| ||||||||| | || ||| ||| || ||||||||||||||||| |||| ||| ||||| ||||||| ||||||| |||||| || ||||||| |
|
|
| T |
37428442 |
aagggaccactaaaaattttattatagatgtcgaaaattctcaacttggg-aatggatgtttggtcatagaacaagtgattgtaccatgcagtttatttg |
37428540 |
T |
|
| Q |
201 |
atcgtaaa |
208 |
Q |
| |
|
||| |||| |
|
|
| T |
37428541 |
atcttaaa |
37428548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 26437679 - 26437777
Alignment:
| Q |
67 |
cattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggt |
165 |
Q |
| |
|
|||||||| |||||| |||||| | | ||| ||||| | ||||||||||| ||||| ||||||||||||| |||||||| |||||||| || ||||| |
|
|
| T |
26437679 |
cattcctttaaagtttttgatgtacgttgtgggcaaagagccactaaaattattgttggagacatcaaaaaccctcaacttaggaaatgtttggttggt |
26437777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 26451048 - 26451146
Alignment:
| Q |
67 |
cattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggt |
165 |
Q |
| |
|
|||||||| |||||| |||||| | | ||| ||||| | ||||||||||| ||||| ||||||||||||| |||||||| |||||||| || ||||| |
|
|
| T |
26451048 |
cattcctttaaagtttttgatgtacgttgtgggcaaagagccactaaaattattgttggagacatcaaaaaccctcaacttaggaaatgtttggttggt |
26451146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 14552686 - 14552922
Alignment:
| Q |
25 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgtta |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14552686 |
acccatgtattgcaaaccaatttggctgtcattcacgttcatcattccttgaaagttcttgatgcatgatgttggcaaggtgccactaaaattgttgtta |
14552785 |
T |
|
| Q |
125 |
gagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaact |
224 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| || ||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
14552786 |
gagacatcaaaaattctcaacttaggaaatgaatgcttgatgctagaacaggtgattgctccgtgaagatgatttgatcgtaaacttagcacttgtaact |
14552885 |
T |
|
| Q |
225 |
ctggtagagtttctagccaatcaggaaatgtatcctc |
261 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |
|
|
| T |
14552886 |
cttgtagagtttctagccaattgggaaatgtatcctc |
14552922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 16843837 - 16843595
Alignment:
| Q |
30 |
tgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgttagagac |
129 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16843837 |
tgtattgcaaaccaatctggctatcatccacattcatcattccttgaaagttctggatgcatgatgttggcaaggtgccactaaaattgttgttagagac |
16843738 |
T |
|
| Q |
130 |
atcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggt |
229 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| |||||| | |||||||||||||| ||||||||| | |||||||||||| || |
|
|
| T |
16843737 |
atcaaaaattctcaacttaggaaatggatgcttggtgctagaacaagtgattactccatgaagattattagatcgtaaaacgagtacctgtaactcttgt |
16843638 |
T |
|
| Q |
230 |
agagtttctagccaatcaggaaatgtatcctcaacgttgttgt |
272 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | |||||||| |
|
|
| T |
16843637 |
agagtttcaagccaactgggaaatgtatcctctatgttgttgt |
16843595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 24218577 - 24218344
Alignment:
| Q |
25 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgtta |
124 |
Q |
| |
|
|||| |||||||||||||| || || |||||||||| |||||||||||||| ||||||| ||| |||||||||| ||| |||| ||||| || | |
|
|
| T |
24218577 |
acccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattcttgaggcaagatgttggcacggggccacggaaattattacca |
24218478 |
T |
|
| Q |
125 |
gagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaact |
224 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| || |||||||||||||| |||||| |||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
24218477 |
gagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgattccaccatgaagatgatttgatcgtaaactgagtacctgtaact |
24218378 |
T |
|
| Q |
225 |
ctggtagagtttctagccaatcaggaaatgtatc |
258 |
Q |
| |
|
|| | ||| ||||| ||||| ||||||||||| |
|
|
| T |
24218377 |
cttgcagaacttctaaccaattgggaaatgtatc |
24218344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 272
Target Start/End: Complemental strand, 16846481 - 16846263
Alignment:
| Q |
53 |
tcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaa |
152 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||| |||||||||||||| || ||||| || ||||| | ||| || ||||||||||| |||| || |
|
|
| T |
16846481 |
tcattcgcgttcatcattccttgaaaattcttgatacatgatgttggcaacggtccactgaatttgttatcgaagatgtccaaaattctcaatttgg-aa |
16846383 |
T |
|
| Q |
153 |
atgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaa |
252 |
Q |
| |
|
||| |||||||||||||||||| ||||||| ||||| ||| |||||||| | |||||| | || ||||||||| |||||||||| |||||| ||||| |
|
|
| T |
16846382 |
atggatgcttggtgctagaacatgtgattgaaccataaagtttatttgaccttaaactgagtacatgtaactcttgtagagtttcaagccaactgggaaa |
16846283 |
T |
|
| Q |
253 |
tgtatcctcaacgttgttgt |
272 |
Q |
| |
|
||||||||| | |||||||| |
|
|
| T |
16846282 |
tgtatcctctatgttgttgt |
16846263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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