View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_low_34 (Length: 256)
Name: NF9961_low_34
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_34 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 40700679 - 40700504
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaa-cccaacaaatggacattctccacacnnnnnnnnnnttacattatctaatt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
40700679 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaaacccaacaaatggacattttccacaaaaaaaaaaaattacattatctaatt |
40700580 |
T |
|
| Q |
181 |
ttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40700579 |
ttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattatcatagggcgaatatgtgaat |
40700504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 38348900 - 38348725
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaa--cccaacaaatggacattctccacacnnnnnnnnnnttacattatctaat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38348900 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaaaacccaacaaatggacattctccaca-aaaaaagaaattacattatctaat |
38348802 |
T |
|
| Q |
180 |
tttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaat |
256 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38348801 |
tttctcttggttagatctatgatgttcatgccataaaccgttagaacttgaaattatcatagggcgaatatgtgaat |
38348725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 82 - 255
Target Start/End: Original strand, 10028233 - 10028406
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaa--cccaacaaatggacattctccacacnnnnnnnnnnttacattatctaat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10028233 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaaaacccaacaaatggacattctccaca--aaaaaaaaattacattatctaat |
10028330 |
T |
|
| Q |
180 |
tttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaa |
255 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
10028331 |
tttctcttggatagatctatgatgtccatgtcataaaccgttataacttgaaattatcatagggcgaatatgtgaa |
10028406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 256
Target Start/End: Original strand, 20787728 - 20787903
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaacccaa-caaatggacattctccacacnnnnnnnnnnttacattatctaatt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20787728 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaaaccaaacaaatggacattctccacaaaaaaaaaaaattacattatctaatt |
20787827 |
T |
|
| Q |
181 |
ttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||| ||||| |
|
|
| T |
20787828 |
ttctcttgggtagatctatgatgtccatgtcataaacagttagaacttgaaattatcatagggtgaatatatgaat |
20787903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 42614973 - 42614796
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacataacatatattatagatgaaaaaaa-cccaacaaatggacattctccacacnnnnnnnnnn--ttacattatctaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
42614973 |
ttcaatagaatatgaaaccgaacataacatatattttagatgaaaaaaaacccaacaaatggacattttccacaaaaaaaaaaaaaattacattatctaa |
42614874 |
T |
|
| Q |
179 |
ttttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42614873 |
ttttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattatcatagggcgaatatgtgaat |
42614796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 18070202 - 18070275
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacataacatatattatagat-gaaaaaaacccaacaaatggacattctccaca |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18070202 |
ttcaatagaatatgaaaccgaacataacatatattatagatggaaaaaaacccaacaaatggacattctccaca |
18070275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 17990535 - 17990483
Alignment:
| Q |
204 |
tccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17990535 |
tccatgccataaaccgttagaacttgaaattatcatagggcgaatatgtgaat |
17990483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 18072454 - 18072506
Alignment:
| Q |
204 |
tccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18072454 |
tccatgccataaaccgttagaacttgaaattatcatagggcgaatatgtgaat |
18072506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 91 - 253
Target Start/End: Complemental strand, 12515544 - 12515383
Alignment:
| Q |
91 |
atatgaaaccgaacataacatatattatagatgaaaaaaacccaacaaatggacattctccacacnnnnnnnnnnttacattatctaattttctcttggg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
12515544 |
atatgaaaccgaacataacatatattatagatgaaaaaaacccaacaaatggacattctccaaa-aaaaataaaattacattatctaattttcttttggg |
12515446 |
T |
|
| Q |
191 |
tagatctatgatgtccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtg |
253 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12515445 |
tagatctatgatgtccatgccataaatcgttagaacttgaaattatcatagggcgaatatgtg |
12515383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 27431356 - 27431283
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacataacatatattatagat-gaaaaaaacccaacaaatggacattctccaca |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27431356 |
ttcaatagaatatgaaaccgaacataacatatattatagatggaaaaaaacccaacaaatggacattctccaca |
27431283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 27429103 - 27429051
Alignment:
| Q |
204 |
tccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27429103 |
tccatgccataaaccgttagaacttgaaattatcatagggcgaatatgtgaat |
27429051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 35392 - 35218
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacata--acatatattatagatgaaaaaaacc---caacaaatggacattctccacacnnnnnnnnnnttacattatct |
176 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
35392 |
ttcaatagaatatgaaaccgaacatataacatatattatagatgaaaaaaaaaatgcaacaaatggacattctccaca--aaaaaaaaattacattatct |
35295 |
T |
|
| Q |
177 |
aattttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| |
|
|
| T |
35294 |
aattttctcttgggtagatctatgatgtccatgccataaacggttagaacttgaaattatcataggacaaatatgtg |
35218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 163387 - 163561
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacata--acatatattatagatgaaaaaaacc---caacaaatggacattctccacacnnnnnnnnnnttacattatct |
176 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
163387 |
ttcaatagaatatgaaaccgaacatataacatatattatagatgaaaaaaaaaatgcaacaaatggacattctccaca--aaaaaaaaattacattatct |
163484 |
T |
|
| Q |
177 |
aattttctcttgggtagatctatgatgtccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| |
|
|
| T |
163485 |
aattttctcttgggtagatctatgatgtccatgccataaacggttagaacttgaaattatcataggacaaatatgtg |
163561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 56007 - 56080
Alignment:
| Q |
82 |
ttcaatagaatatgaaaccgaacataacatatattatagat-gaaaaaaacccaacaaatggacattctccaca |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
56007 |
ttcaatagaatatgaaaccgaacataacatatattatagatggaaaaaaacccaacaaatggacattctccaca |
56080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 58260 - 58312
Alignment:
| Q |
204 |
tccatgccataaaccgttagaacttgaaattagcatagggcgaatatgtgaat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
58260 |
tccatgccataaaccgttagaacttgaaattatcatagggcgaatatgtgaat |
58312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University