View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_35 (Length: 255)
Name: NF9961_low_35
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 39411796 - 39411562
Alignment:
| Q |
15 |
ataaaaaccatctccattatactccagtgaagtgagattgaggcagtccactaacatcaattttaaatccatcatgatattgttggatgccttata---- |
110 |
Q |
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| T |
39411796 |
ataaaaaccatctccattatactccaacgaagtgacgttaaggcagtgccctaacattagtttcaaatctgtcatggtattgttgaatgccttatatata |
39411697 |
T |
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| Q |
111 |
gcaacctgtaaccttgagatggcataaagatgaacttactatctttggtgttgatgatttaaacttacaagaatctaagtagagctcttcaagtagtaga |
210 |
Q |
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| T |
39411696 |
gcaacctgttaccttgaaatggcataaagatgatcttactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtaga |
39411597 |
T |
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| Q |
211 |
caattagataacaaactttctatgaacatttcatc |
245 |
Q |
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|||| || |||||||||||||||||||||||||| |
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| T |
39411596 |
caatcagggaacaaactttctatgaacatttcatc |
39411562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 39403477 - 39403350
Alignment:
| Q |
117 |
tgtaaccttgagatggcataaagatgaacttactatctttggtgttgatgatttaaacttacaagaatctaagtagagctcttcaagtagtagacaatta |
216 |
Q |
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| T |
39403477 |
tgtaaccttgagatggcataaagatgaacttacgatctttggtgttgatgatttaaacttacaagaatctaaatagagctcttcaagtagtagacaatta |
39403378 |
T |
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| Q |
217 |
gataacaaactttctatgaacatttcat |
244 |
Q |
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| T |
39403377 |
gataccaaactttctatgaacatttcat |
39403350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 47927373 - 47927268
Alignment:
| Q |
140 |
atgaacttactatctttggtgttgatgatttaaacttacaagaatctaagtagagctcttcaagtagtagacaattagataacaaactttctatgaacat |
239 |
Q |
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| T |
47927373 |
atgaatttactatctttggtattgataatttgaactcacaataaactaagcaaagctcttcaagcagtccacaattagataacaaactttctatgaacat |
47927274 |
T |
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| Q |
240 |
ttcatc |
245 |
Q |
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|||||| |
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| T |
47927273 |
ttcatc |
47927268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 48108016 - 48108153
Alignment:
| Q |
108 |
atagcaacctgtaaccttgagatggcataaagatgaacttactatctttggtgttgatgatttaaacttacaagaatctaagtagagctcttcaagtagt |
207 |
Q |
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|||||| ||| || |||||||||| |||| ||||||||||||||||| ||| || ||||||| || | |||| || |||| | |||||||||||| || |
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| T |
48108016 |
atagcaccctatagccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaagtaagcaaagctcttcaagttgt |
48108115 |
T |
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| Q |
208 |
agacaattagataacaaactttctatgaacatttcatc |
245 |
Q |
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| T |
48108116 |
ggacaattagataacaaactttcaatgaaagtttcatc |
48108153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 48453940 - 48454021
Alignment:
| Q |
164 |
atgatttaaacttacaagaatctaagtagagctcttcaagtagtagacaattagataacaaactttctatgaacatttcatc |
245 |
Q |
| |
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||||||| |||| |||| ||||||||| ||||||||||| ||||||||||||| |||||||||| ||||| |||||||| |
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| T |
48453940 |
atgatttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatc |
48454021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 47928608 - 47928556
Alignment:
| Q |
92 |
tattgttggatgccttatagcaacctgtaaccttgagatggcataaagatgaa |
144 |
Q |
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| T |
47928608 |
tattgttagataccttatagcaatttgtaaccttgagatgacataaggatgaa |
47928556 |
T |
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