View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9961_low_4 (Length: 654)

Name: NF9961_low_4
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9961_low_4
NF9961_low_4
[»] chr4 (1 HSPs)
chr4 (3-637)||(53613464-53614098)


Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 3 - 637
Target Start/End: Complemental strand, 53614098 - 53613464
Alignment:
Q  3 gagtttggtgtttaggatcacatgaagcagacaacaaggcttggatcccaacatacaatcactgaaaccgtcgaaaaaatagaagctgctgcagcagatg 102  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53614098 gagtttgatgtttaggatcacatgaagcagacaacaaggcttggatcccaacatacaatcactgaaaccgtcgaaaaaatagaagctgctgcagcagatg 53613999  T
Q  103 ttagactgtcagtnnnnnnnntgaacaactttaaggtctaaaacagtgcttataatttgatttttaaatgcttgatgaaaatatttaccttttctagagt 202  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53613998 ttagactgtcagtaaaaaaaatgaacaactttaaggtctaaaacagtgcttataatttgatttttaaatgcttgatgaaaatattaaccttttctagagt 53613899  T
Q  203 ctggcaacacaaatgaacttttactcttcatatcagatgaaaatgcactcgaaagagacaatgacgaggtgttctagatcatactttgacatatcagctg 302  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53613898 ctggcaacacaaatgaacttttactcttaatatcagatgaaaatgcactcgaaagagacaatgacgaggtgttctagatcatactttgacatatcagctg 53613799  T
Q  303 aggtcatactcattttatcatcacatattctcccttttttccttttattttgctttattattaaaccaagttcatttctgtactgatatatacgtcgaaa 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53613798 aggtcatactcattttatcatcacaaattctcccttttttccttttattttgctttattattaaaccaagttcatttctgtactgatatatacgtcgaaa 53613699  T
Q  403 ttatcaggtgattgaagttgctccggctcattgtgttgtacaagtatcaaaatctgtaggagatctaagaatgtataatgaggtaagaaaacacatcctg 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53613698 ttatcaggtgattgaagttgctccggctcattgtgttgtacaagtatcaaaatctgtaggagatctaagaatgtataatgaggtaagaaaacatatcctg 53613599  T
Q  503 ttaattgaatattcataagatcataaatatggttaccgatttaattttgattatcagttttgtgaaagtttatcaaacctgctgaaagacgaatctagta 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53613598 ttaattgaatattcataagatcataaatatggttaccgatttaattttgattatcagttttgtgaaagtttatcaaacctgctgaaagacgaatctagta 53613499  T
Q  603 ttccaccaaacggccaagactcggtggatcgatgc 637  Q
    |||||||| ||||||||||||| ||||||||||||    
T  53613498 ttccaccacacggccaagactctgtggatcgatgc 53613464  T

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