View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_40 (Length: 247)
Name: NF9961_low_40
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 4403035 - 4402939
Alignment:
| Q |
41 |
aggtaaaggtgaacttgatgtagaagatgacgaaaaattatgaaaaggaaaatgcagctcatagaaaataacatttctagaaatgaataactgatga |
137 |
Q |
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| T |
4403035 |
aggtaaaggtgaacttgatgtagaagatgacgaagaaacatgaaaaggaaaatgcagctcatagaaaatattatttctagaaatgaataactgatga |
4402939 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 6096591 - 6096460
Alignment:
| Q |
80 |
atgaaaaggaaaatgcagctcatagaaaataacatttctagaaatgaataactgatgagaaagtaactcatagagaatatatcctttgactccctctttg |
179 |
Q |
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||||||||||||||| |||| ||||||||||||| |||||||| | | ||||||||| | || ||||| | |||||| || || || |||||||| |
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| T |
6096591 |
atgaaaaggaaaatgatcctcaaagaaaataacattcctagaaataatcatttgatgagaatgcaaatcatacaaaatatagccctttacaccctcttta |
6096492 |
T |
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| Q |
180 |
taaccaagaaaaacagcctttctagccctatg |
211 |
Q |
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| T |
6096491 |
taaccaagaaaaactgtttttctagctctatg |
6096460 |
T |
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