View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9961_low_42 (Length: 246)
Name: NF9961_low_42
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 10212947 - 10212709
Alignment:
| Q |
1 |
ccaagtgcaaagcaatttcatctttgtcatttttaaatgaatgttgcaggtgactgagttgcgtaaaggtgttagatcaacttatgatccatcctttgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10212947 |
ccaagtgcaaagcaatttcatctttgtcatttttaaacgaatgttgcaggtgactgagttgcgtaaaggtgttagatcagcttatgatccatcctttgta |
10212848 |
T |
|
| Q |
101 |
attccatcaacacaatctttgtttaaaggagtaactaggagttttgtagttattaatacagtaagtattttatcatagggatcaaattctctcactctta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
10212847 |
attccatcaacacaatctttgtttaaaggagtaactaggagttttgtagttattaatacagtaagtattttatgatagggatcaaattttctcactctta |
10212748 |
T |
|
| Q |
201 |
cctctcaacttttttatcacctgcattgtcaaccaccaa |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10212747 |
cctctcaacttttttatcacctgcattgtcaaccaccaa |
10212709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 10105329 - 10105549
Alignment:
| Q |
2 |
caagtgcaaagcaatttcatctttgtcatttttaaatgaatgttgcaggtgactgagttgcgtaaaggtgttagatcaacttat---gatccatcctttg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||||| ||||| | |
|
|
| T |
10105329 |
caagtgcaaagcaatttcatctttgtcatttttaaatgaatgttgcaggtgactgagttgtgtacaggtgtcagatcagcttatctggatccttccttcg |
10105428 |
T |
|
| Q |
99 |
taattccatcaacacaatctttgtttaaaggagtaactaggagttttgtagttattaatacagtaagtattttatcatagggatcaaattctctcactct |
198 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10105429 |
taataccatcaacacaatctttgtctgaaggagtaaccaggagttttgtagttattaatatagtaagtattttatcatagggatcaaattctccaactct |
10105528 |
T |
|
| Q |
199 |
tacctctcaacttttttatca |
219 |
Q |
| |
|
|| ||||||| |||||||||| |
|
|
| T |
10105529 |
tatctctcaatttttttatca |
10105549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 9675399 - 9675302
Alignment:
| Q |
21 |
tctttgtcatttttaaatgaatgttgcaggtgactgagttgcgtaaaggtgttagatcaacttat----gatccatcctttgtaattccatcaacaca |
114 |
Q |
| |
|
||||||||||||||||| ||||| |||| | ||||||| | | |||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
9675399 |
tctttgtcatttttaaactaatgtcgcagatcactgagtcgtatgaaggtgttagatcagtttatcctggatccatcctttgtaattccatcaacaca |
9675302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9683346 - 9683269
Alignment:
| Q |
1 |
ccaagtgcaaagcaatttcatctttgtcattttta-aatgaatgttgcaggtgactgagttgcgtaaaggtgttagat |
77 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || |||||||||||| |||| || | ||| |||||||||| |
|
|
| T |
9683346 |
ccaagtgcaaagcaatttcatctttgttgtttttataacaaatgttgcaggttactgggtcgtataagggtgttagat |
9683269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 10108938 - 10108984
Alignment:
| Q |
175 |
atagggatcaaattctctcactcttacctctcaacttttttatcacctg |
223 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
10108938 |
atagggataaaattctcccactctta--tctcaacttttttatcacctg |
10108984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 10210183 - 10210118
Alignment:
| Q |
175 |
atagggatcaaattctctcactcttacctctcaactttttt-atcacctgcattgtcaaccaccaa |
239 |
Q |
| |
|
||||||||||||| || |||||| | |||||||||||||| |||||||||||| | ||||||||| |
|
|
| T |
10210183 |
atagggatcaaatgatcccactctaatctctcaactttttttatcacctgcattcttaaccaccaa |
10210118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University