View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9961_low_44 (Length: 244)
Name: NF9961_low_44
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9961_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 45369204 - 45369432
Alignment:
| Q |
1 |
tcaactgaagaaattacccctttagttctgcattcataaattattaatgatcaccgccatatttgtggtacttgccagggaggtggttggtgcaatgact |
100 |
Q |
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| T |
45369204 |
tcaactgaagaaattacccctttagttctgcattcataaattattaatgatcaccgccatatttgtggtacttgccagggaggtggttggtgcaatgact |
45369303 |
T |
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| Q |
101 |
tgaaatcatgcttggagagagcaaacactcgcaggggttcaacaaattacatgaccaaatatgagaccttcaatggtattttaagcaacaatgctaccgt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45369304 |
tgaaatcatgcttggagagagcaaaaactcgcaggggttcaacaaattacatgaccaaatatgagaccttcaatggtattttaagcaacaatgctaccgt |
45369403 |
T |
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| Q |
201 |
taatccaggtaaatcaatatctgctctgt |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45369404 |
taatccaggtaaatcaatatctgctctgt |
45369432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 45385727 - 45385955
Alignment:
| Q |
1 |
tcaactgaagaaattacccctttagttctgcattcataaattattaatgatcaccgccatatttgtggtacttgccagggaggtggttggtgcaatgact |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45385727 |
tcaactgaagaaattacccctttagttctgcattcataaattattaatgatcaccgccatatttgtggtacttgccagggaggtggttggtgcaatgact |
45385826 |
T |
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| Q |
101 |
tgaaatcatgcttggagagagcaaacactcgcaggggttcaacaaattacatgaccaaatatgagaccttcaatggtattttaagcaacaatgctaccgt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45385827 |
tgaaatcatgcttggagagagcaaaaactcgcaggggttcaacaaattacatgaccaaatatgagaccttcaatggtattttaagcaacaatgctaccgt |
45385926 |
T |
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| Q |
201 |
taatccaggtaaatcaatatctgctctgt |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45385927 |
taatccaggtaaatcaatatctgctctgt |
45385955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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