View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9961_low_48 (Length: 238)

Name: NF9961_low_48
Description: NF9961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9961_low_48
NF9961_low_48
[»] chr2 (1 HSPs)
chr2 (14-221)||(20421622-20421829)
[»] chr6 (2 HSPs)
chr6 (14-140)||(9884097-9884223)
chr6 (143-200)||(9884255-9884312)
[»] chr1 (2 HSPs)
chr1 (14-150)||(15607514-15607643)
chr1 (145-221)||(15607412-15607490)
[»] chr5 (1 HSPs)
chr5 (155-221)||(135456-135525)
[»] scaffold0003 (1 HSPs)
scaffold0003 (157-221)||(112282-112349)
[»] scaffold1801 (1 HSPs)
scaffold1801 (92-141)||(1022-1071)
[»] scaffold0902 (1 HSPs)
scaffold0902 (88-140)||(1762-1814)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 20421829 - 20421622
Alignment:
Q  14 cagagatcaagtatgcaattatacagtttctcttcagttttttactatgttaggaaaggatcaaatcaattgtacataatttaaaattctgattaggggc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  20421829 cagagatcaagtatgcaattatacagtttctcttcagttttttactatgttaggaaaggatcaaataaattgtacatcatttaaaattctgattaggggc 20421730  T
Q  114 aaaagcaaggagtttaagatattgttactgaagctaaacaccattcagaaaaaagaaatcagttgtcaaaaatcagaaacaaccacaatcattgtaattg 213  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20421729 aaaagcaaggagtttaagatattgttacagaagctaaacaccattcagaaaaaagaaatcagttgtcaaaaatcagaaacaaccacaatcattgtaattg 20421630  T
Q  214 catcctac 221  Q
    ||||||||    
T  20421629 catcctac 20421622  T

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Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 9884097 - 9884223
Alignment:
Q  14 cagagatcaagtatgcaattatacagtttctcttcagttttttactatgttaggaaaggatcaaatcaattgtacataatttaaaattctgattaggggc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  9884097 cagagatcaagtatgcaattatacagtttctcttcagttttttaccatgttaggaaaggatcaaataaattgtacatcatttaaaattctgattaggggc 9884196  T
Q  114 aaaagcaaggagtttaagatattgtta 140  Q
    |||||||||||||||||||||||||||    
T  9884197 aaaagcaaggagtttaagatattgtta 9884223  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 9884255 - 9884312
Alignment:
Q  143 gaagctaaacaccattcagaaaaaagaaatcagttgtcaaaaatcagaaacaaccaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9884255 gaagctaaacaccattcagaaaaaagaaatcagttgtcaaaaatcagaaacaaccaca 9884312  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 15607643 - 15607514
Alignment:
Q  14 cagagatcaagtatgcaattatacagtttctcttc-agttttttactatgttaggaaaggatcaaatcaattgtacataattt--aaaattctgattagg 110  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||          |||| | ||||| ||||  |||||||||||||||    
T  15607643 cagagatcaagtatgcaattatatagtttctcttttagttttttactatgttagga----------tcaaatatacatcattttaaaaattctgattagg 15607554  T
Q  111 ggcaaaagcaaggagtttaagatattgttactgaagctaa 150  Q
    ||||||||||||||||| ||||||||||||| || |||||    
T  15607553 ggcaaaagcaaggagttcaagatattgttacagatgctaa 15607514  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 15607490 - 15607412
Alignment:
Q  145 agctaaacaccattcagaaaaaagaaatcagttgtcaaaaatcagaaacaa---ccacaatcattgtaattgcatcctac 221  Q
    ||||||| ||||||||||| || ||| ||||||||||||||||||||||||   |||||||||||||| |||||||||||    
T  15607490 agctaaaaaccattcagaagaa-gaattcagttgtcaaaaatcagaaacaacagccacaatcattgtacttgcatcctac 15607412  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 135525 - 135456
Alignment:
Q  155 cattcagaaaaaagaaatcagttgtcaaaaatcagaaacaa---ccacaatcattgtaattgcatcctac 221  Q
    |||||||||||||||||||||||||||||||||| ||||||   |||||||||||||| |||||||||||    
T  135525 cattcagaaaaaagaaatcagttgtcaaaaatcataaacaacagccacaatcattgtagttgcatcctac 135456  T

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Target: scaffold0003 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 112349 - 112282
Alignment:
Q  157 ttcagaaaaaagaaatcagttgtcaaaaatcagaaacaa---ccacaatcattgtaattgcatcctac 221  Q
    |||||||||||||||||||||||||||||||| ||||||   |||||||||||||| |||||||||||    
T  112349 ttcagaaaaaagaaatcagttgtcaaaaatcataaacaacagccacaatcattgtagttgcatcctac 112282  T

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Target: scaffold1801 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 1071 - 1022
Alignment:
Q  92 atttaaaattctgattaggggcaaaagcaaggagtttaagatattgttac 141  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  1071 atttaaaattctgatcaggggcaaaagcaaggacttcaagatattgttac 1022  T

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Target: scaffold0902 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 1762 - 1814
Alignment:
Q  88 cataatttaaaattctgattaggggcaaaagcaaggagtttaagatattgtta 140  Q
    ||||||||||||||||||||||| ||||||||||||| || || |||||||||    
T  1762 cataatttaaaattctgattaggagcaaaagcaaggacttgaaaatattgtta 1814  T

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